Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   LO007_RS00935 Genome accession   NZ_CP087312
Coordinates   193828..194982 (-) Length   384 a.a.
NCBI ID   WP_031999985.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OC059     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 188828..199982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO007_RS00915 - 189989..190639 (+) 651 WP_001984979.1 TetR/AcrR family transcriptional regulator -
  LO007_RS00920 - 190745..191665 (+) 921 WP_000084546.1 DMT family transporter -
  LO007_RS00925 - 192057..192626 (-) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  LO007_RS00930 dprA 192677..193807 (-) 1131 WP_031956569.1 DNA-processing protein DprA Machinery gene
  LO007_RS00935 tsaP 193828..194982 (-) 1155 WP_031999985.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  LO007_RS00940 def 195105..195635 (+) 531 WP_001196539.1 peptide deformylase -
  LO007_RS00945 - 195672..196100 (+) 429 WP_000231981.1 DUF2946 family protein -
  LO007_RS00950 - 196173..198287 (+) 2115 WP_031999983.1 TonB-dependent copper receptor -
  LO007_RS00955 - 198341..198547 (+) 207 WP_021510391.1 hypothetical protein -
  LO007_RS00960 - 198617..199831 (-) 1215 WP_001177956.1 oxygenase MpaB family protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42321.19 Da        Isoelectric Point: 8.5841

>NTDB_id=628577 LO007_RS00935 WP_031999985.1 193828..194982(-) (tsaP) [Acinetobacter baumannii strain OC059]
MKKVFNGMVNFHALGIKKHLLALALCTGVAIGTIAEVHATSPNHNPHSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCAGIIRRYTGQTTSLQPQVRVEALNNSVPVIPLEHIKQWLE
NSTILPADSITNTPYIVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTTQGVQVGQ
VFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=628577 LO007_RS00935 WP_031999985.1 193828..194982(-) (tsaP) [Acinetobacter baumannii strain OC059]
ATGAAAAAGGTTTTTAACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCCTTGGCGCTCTGTAC
AGGTGTCGCAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAACCATAATCCACACTCACTTAAAAGTAATGCAC
CCAATGTATATGTTGTAAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCACACTGGATCTATCCGGGTGACCGATTACTATTATGTAGCCTAGA
TGGGCGTCCTTTAGTCGGTAAAGATGAGGGCGATGGTTGTGCAGGTATTATTCGCCGCTATACAGGTCAAACCACAAGCC
TACAACCACAAGTTCGCGTCGAAGCATTAAATAATAGCGTTCCGGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
AACAGTACTATTTTACCAGCCGATTCAATTACCAACACACCTTATATTGTTGGTACAGCCGATCAACGTGTACTTGCAGG
AAAAGGCCAGACCATTTACGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCCGTCTACCGAGAAGGTGAACCTT
ACTATTTCACAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAGTTACTACAGGTTGCTTCAGGTGTTGCGGTATCT
TCTGAAAAAGATATTACTACATTAGAACTAACAGATAGTTATAACGCTGAAGTTCGTCGTGGTGATCGTGTTATGCCTGA
AGAGCAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACGGATGGTGGCAAGATTATTCGTGTCA
TGGGTTCAATTGGTAGAGCTGCAAAAAATAGTGTAGTGACTTTGGACCGCGGTACAACCCAAGGCGTTCAAGTAGGCCAA
GTTTTTGATATTACCCAACAAGGTGAATCAATTCGCGACCCTAAAACCAAAGAAGTAATTCAACTTCCTGGCCAACAAAT
TGGCAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTATGTTTTAGAGAGCGATTTACCAATTAAGGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

98.698

100

0.987