Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   N4T41_RS15800 Genome accession   NZ_CP104340
Coordinates   2918310..2919575 (-) Length   421 a.a.
NCBI ID   WP_001285409.1    Uniprot ID   A0ABX6CPG9
Organism   Acinetobacter baumannii strain 2021CK-01409     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2913310..2924575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4T41_RS15770 (N4T41_15780) pncA 2913532..2914176 (-) 645 WP_024437648.1 bifunctional nicotinamidase/pyrazinamidase -
  N4T41_RS15775 (N4T41_15785) dapA 2914506..2915399 (+) 894 WP_000193598.1 4-hydroxy-tetrahydrodipicolinate synthase -
  N4T41_RS15780 (N4T41_15790) - 2915415..2916017 (+) 603 WP_001177091.1 hypothetical protein -
  N4T41_RS15785 (N4T41_15795) purC 2916055..2916774 (+) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  N4T41_RS15790 (N4T41_15800) - 2916967..2917170 (+) 204 WP_000418560.1 hypothetical protein -
  N4T41_RS15795 (N4T41_15805) - 2917456..2918295 (+) 840 WP_000349492.1 formate/nitrite transporter family protein -
  N4T41_RS15800 (N4T41_15810) rarA 2918310..2919575 (-) 1266 WP_001285409.1 replication-associated recombination protein A Machinery gene
  N4T41_RS15805 (N4T41_15815) - 2919681..2920616 (-) 936 Protein_2783 PQQ-dependent sugar dehydrogenase -
  N4T41_RS15810 (N4T41_15820) - 2920669..2921373 (-) 705 WP_001067855.1 IS6-like element IS26 family transposase -
  N4T41_RS15815 (N4T41_15825) - 2921617..2922477 (+) 861 WP_000027057.1 broad-spectrum class A beta-lactamase TEM-1 -
  N4T41_RS15820 (N4T41_15830) aadB 2922555..2923088 (+) 534 WP_000381803.1 aminoglycoside nucleotidyltransferase ANT(2'')-Ia -
  N4T41_RS15825 (N4T41_15835) - 2923146..2923934 (+) 789 WP_000503574.1 ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA5 -
  N4T41_RS15830 (N4T41_15840) - 2924055..2924369 (+) 315 WP_079265609.1 DUF1010 domain-containing protein -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46932.60 Da        Isoelectric Point: 5.8354

>NTDB_id=628535 N4T41_RS15800 WP_001285409.1 2918310..2919575(-) (rarA) [Acinetobacter baumannii strain 2021CK-01409]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=628535 N4T41_RS15800 WP_001285409.1 2918310..2919575(-) (rarA) [Acinetobacter baumannii strain 2021CK-01409]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCACCCTTACGTCAAATGATTGATCAGGGACATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTGAATACGGGCGTA
AAAGAATTACGTGAAGTGATTGCAGAAAGTGGTGACTTACTGACCCCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGTGCGACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAGGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGCTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCTCGTAAGGCACTCAATTTACTTGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CCATTACCAATGCGGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATCAAATCGATTCGTGGTAGTGATCCGGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
TGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCGATTAATAAGGCCTTGGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAGCTGATGAAACAGCAAGGTTATGGAATTAATTATCTCT
ATCCTCATGACTACCCAGAGCACTTTGTACTGCAAGACTACTTGCCACCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCTTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.75

95.012

0.387