Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LO014_RS16860 Genome accession   NZ_CP087300
Coordinates   3362987..3363412 (-) Length   141 a.a.
NCBI ID   WP_000788339.1    Uniprot ID   A0A009QPU5
Organism   Acinetobacter baumannii strain OC061     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3357987..3368412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO014_RS16830 - 3358520..3359551 (+) 1032 WP_258583667.1 lipase secretion chaperone -
  LO014_RS16835 - 3359666..3360607 (+) 942 WP_085943440.1 triacylglycerol lipase -
  LO014_RS16840 rplS 3360659..3361027 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  LO014_RS16845 trmD 3361235..3361975 (-) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LO014_RS16850 rimM 3362021..3362569 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  LO014_RS16855 rpsP 3362589..3362840 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  LO014_RS16860 pilE 3362987..3363412 (-) 426 WP_000788339.1 type IV pilin protein Machinery gene
  LO014_RS16865 pilY2 3363409..3363891 (-) 483 WP_001046418.1 type IV pilin protein Machinery gene
  LO014_RS16870 pilY1 3363904..3367758 (-) 3855 WP_000768940.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15210.39 Da        Isoelectric Point: 7.8144

>NTDB_id=628465 LO014_RS16860 WP_000788339.1 3362987..3363412(-) (pilE) [Acinetobacter baumannii strain OC061]
MKNGFSLIEIMVVVAIVAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESQKMVNNRYPSNATIQSIYGSNVSPLQG
KALYTLAFTTLNDSTWVLTATPIANTSQAGDGIICLNDQGQKFWAKGATDCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=628465 LO014_RS16860 WP_000788339.1 3362987..3363412(-) (pilE) [Acinetobacter baumannii strain OC061]
GTGAAGAATGGTTTTTCTTTAATTGAAATTATGGTTGTGGTAGCAATAGTTGCAATTTTAGCGGCTATAGCCACCCCTTC
ATATTTACAATATTTGCGTAAAGGACATCGTACTGCTGTTCAATCCGAAATGATGAATATTGCGCAGACTTTAGAGTCTC
AAAAAATGGTGAATAACCGTTATCCCTCAAATGCAACTATACAATCAATTTATGGCTCTAATGTGAGTCCTCTTCAGGGC
AAAGCTTTATATACTTTAGCTTTTACTACTTTAAACGATTCGACATGGGTGCTTACGGCAACACCAATCGCTAATACTTC
ACAAGCTGGTGATGGAATTATTTGCTTAAATGATCAAGGGCAAAAATTTTGGGCAAAAGGTGCTACAGATTGTGCACTAT
CGGCTTCATCGAGTTGGACAGAGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009QPU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

97.872

100

0.979
  comF Acinetobacter baylyi ADP1

51.429

99.291

0.511