Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   LO009_RS08675 Genome accession   NZ_CP087298
Coordinates   1798096..1798797 (+) Length   233 a.a.
NCBI ID   WP_138148988.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OC070     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1793096..1803797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO009_RS08640 kdsB 1793619..1794380 (+) 762 WP_138148982.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LO009_RS08645 - 1794392..1795372 (+) 981 WP_138148984.1 DNA polymerase III subunit delta' -
  LO009_RS08650 - 1795384..1795725 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  LO009_RS08655 - 1795743..1796516 (+) 774 WP_000497295.1 TatD family hydrolase -
  LO009_RS08660 - 1796554..1797162 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  LO009_RS08665 - 1797172..1797726 (+) 555 WP_138148986.1 type II secretion system protein -
  LO009_RS08670 xcpV 1797716..1798096 (+) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  LO009_RS08675 xcpW 1798096..1798797 (+) 702 WP_138148988.1 type II secretion system minor pseudopilin GspJ Machinery gene
  LO009_RS08680 gspK 1798797..1799756 (+) 960 WP_138148990.1 type II secretion system minor pseudopilin GspK -
  LO009_RS08685 - 1799986..1800582 (+) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  LO009_RS08690 ung 1800633..1801346 (+) 714 WP_001177528.1 uracil-DNA glycosylase -
  LO009_RS08695 - 1801343..1802467 (+) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  LO009_RS08700 tadA 1802474..1802977 (+) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -
  LO009_RS08705 - 1803047..1803490 (+) 444 WP_001246675.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26629.59 Da        Isoelectric Point: 9.5501

>NTDB_id=628414 LO009_RS08675 WP_138148988.1 1798096..1798797(+) (xcpW) [Acinetobacter baumannii strain OC070]
MIKNKYIHIRSFASRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPVLEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEATKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=628414 LO009_RS08675 WP_138148988.1 1798096..1798797(+) (xcpW) [Acinetobacter baumannii strain OC070]
ATGATAAAAAATAAATATATTCACATCCGCAGCTTTGCTTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGTTTTAGAAATCGATAA
TCAAATTCTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGCCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

98.712

100

0.987