Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LOK74_RS12920 Genome accession   NZ_CP087263
Coordinates   2603084..2605354 (-) Length   756 a.a.
NCBI ID   WP_230042453.1    Uniprot ID   -
Organism   Brevibacillus humidisoli strain MMS20-4M-10-Y     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2598084..2610354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOK74_RS12900 (LOK74_12900) - 2600934..2601989 (-) 1056 WP_230042449.1 AI-2E family transporter -
  LOK74_RS12905 (LOK74_12905) - 2602083..2602256 (-) 174 WP_230042450.1 hypothetical protein -
  LOK74_RS12910 (LOK74_12910) - 2602285..2602485 (-) 201 WP_230042451.1 hypothetical protein -
  LOK74_RS12915 (LOK74_12915) - 2602501..2603013 (-) 513 WP_230042452.1 PRC-barrel domain-containing protein -
  LOK74_RS12920 (LOK74_12920) recD2 2603084..2605354 (-) 2271 WP_230042453.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LOK74_RS12925 (LOK74_12925) - 2605405..2606553 (-) 1149 WP_230042454.1 cysteine desulfurase family protein -
  LOK74_RS12930 (LOK74_12930) cymR 2606633..2607052 (-) 420 WP_230042455.1 cysteine metabolism transcriptional regulator CymR -
  LOK74_RS12935 (LOK74_12935) - 2607158..2607331 (+) 174 WP_230042456.1 hypothetical protein -
  LOK74_RS12940 (LOK74_12940) - 2607332..2608657 (-) 1326 WP_230042457.1 AAA family ATPase -
  LOK74_RS12945 (LOK74_12945) - 2608872..2609627 (-) 756 WP_230042458.1 tRNA threonylcarbamoyladenosine dehydratase -

Sequence

Protein


Download         Length: 756 a.a.        Molecular weight: 86002.83 Da        Isoelectric Point: 5.3318

>NTDB_id=628190 LOK74_RS12920 WP_230042453.1 2603084..2605354(-) (recD2) [Brevibacillus humidisoli strain MMS20-4M-10-Y]
MSQQTLSLFVEPFIRGQVVREIYFNEENWYGVYRFQVEETNESISEKEVVVVGHFPRPHPDEVYTFYGEWKVHPRFGSQY
SVNRYERETPKTAAGVEKYLASGLFEGIGKKTAKRIVAHLGVDALSVIADNPEQLEQVPGISRERARKIYDSVLEHRMLE
RTMVFLYDFGIGVHLALRIYQTYKSETMDILQTSPYKLVEDIDGIGFKRADEIARAVGVAASSPERVKAAVLYTLKEAAY
GEGHVYLPVAELADRSRRLLAECGGHSFQDDELTLAIQHMFEEQKLIWDDDRAYLSTLFFAEIGLAKQLRYFAKRAFQEA
FPASEYYRALGKVEEELGITYAASQREAVEQALQSGLMLLTGGPGTGKTTVIRAICCVFAELNGLSLDPKQYDPYENPFP
ILLVAPTGRAAKRMTETTGLPAMTIHRLLGWNGDSFEYDQERQVHGRLLIIDEMSMVDIWLANQLFRALPDDIQIVMVGD
PDQLPSVGPGHVLQDMIDSGLIPQVHLHDIYRQAEQSSIIRLAHDIREGKVPEDLLSPAPDRRFFTSSPQDLVRIVKQIC
EGAVKKGYTPKEIQVLSPMYKGNAGVNQLNQELQDLFNPKTEQKREVSYGETVFRTGDKVLQLVNNAEEQVYNGDIGEIV
AIFRPNENEQQEELLVVLFDGKEVAYKRSQYHQLTLAYCCSVHKSQGSEFPIVIMPFVRQYYRMLRRKLVYTGVTRSKSY
LLLCGDPEAFRLAVENDDESVRHTYLRQRLVGQETD

Nucleotide


Download         Length: 2271 bp        

>NTDB_id=628190 LOK74_RS12920 WP_230042453.1 2603084..2605354(-) (recD2) [Brevibacillus humidisoli strain MMS20-4M-10-Y]
TTGTCGCAACAGACGCTCTCCCTGTTTGTCGAACCGTTTATCCGAGGACAAGTGGTGCGAGAAATTTACTTCAATGAAGA
GAATTGGTACGGGGTGTATCGTTTTCAGGTAGAGGAGACAAACGAATCGATCAGCGAAAAGGAAGTCGTTGTGGTTGGCC
ACTTTCCGCGCCCTCATCCCGATGAGGTGTATACGTTCTACGGTGAGTGGAAGGTGCATCCGAGGTTTGGCAGTCAGTAT
AGTGTCAATCGTTACGAGCGGGAGACACCCAAGACGGCAGCGGGTGTGGAAAAGTATTTGGCCAGCGGGTTGTTCGAGGG
GATCGGCAAAAAGACGGCCAAGCGGATTGTGGCCCACTTGGGGGTGGATGCGCTCTCGGTGATTGCTGATAACCCGGAGC
AGTTGGAGCAGGTTCCGGGGATTTCACGTGAGCGGGCGCGCAAAATCTACGATTCGGTGTTGGAGCACCGCATGTTGGAG
AGAACCATGGTCTTCCTCTACGATTTTGGCATCGGTGTTCATCTCGCCCTCCGCATCTACCAGACCTACAAATCAGAGAC
GATGGACATCTTGCAAACGTCACCGTACAAGCTGGTTGAGGATATTGATGGCATCGGCTTTAAGCGGGCTGACGAGATTG
CCCGCGCCGTTGGCGTCGCTGCTTCTTCGCCGGAGCGGGTCAAAGCGGCTGTACTCTATACGCTGAAAGAGGCCGCTTAT
GGAGAGGGGCATGTCTATCTGCCGGTTGCCGAACTGGCAGATAGGAGCCGCAGATTGCTTGCGGAATGCGGGGGTCATTC
GTTTCAAGACGATGAACTGACACTTGCCATACAGCATATGTTTGAAGAGCAAAAGCTGATCTGGGACGATGATCGTGCCT
ATCTGTCGACTCTCTTTTTTGCGGAGATCGGCTTGGCCAAGCAGCTTCGCTATTTTGCCAAACGAGCTTTTCAGGAAGCG
TTTCCCGCTTCGGAATATTATCGGGCGTTAGGCAAAGTAGAAGAAGAGCTGGGGATCACGTACGCTGCTTCCCAGCGGGA
AGCGGTGGAACAAGCGCTGCAGAGCGGCCTGATGCTGCTGACCGGCGGACCCGGAACGGGCAAGACCACCGTGATCCGTG
CCATTTGCTGCGTCTTCGCGGAGCTGAACGGTCTTTCGCTTGATCCCAAGCAGTACGATCCGTATGAGAATCCGTTCCCG
ATCCTGCTCGTTGCACCCACTGGCAGAGCGGCGAAGCGGATGACAGAGACAACCGGCCTGCCGGCGATGACGATTCACCG
TTTGCTTGGATGGAATGGCGACAGCTTCGAGTACGATCAGGAACGTCAGGTGCACGGCAGGCTTCTGATCATTGACGAGA
TGTCGATGGTAGATATTTGGCTTGCCAACCAGTTGTTCCGTGCCCTGCCGGATGACATCCAGATCGTGATGGTCGGCGAT
CCCGATCAACTGCCCTCAGTAGGACCGGGCCATGTGCTGCAGGACATGATCGATTCCGGCCTCATCCCGCAGGTTCACCT
GCACGACATCTACCGTCAGGCGGAGCAATCCTCGATCATTCGGCTAGCCCATGACATTCGCGAGGGGAAGGTTCCGGAGG
ATCTGCTGTCCCCTGCCCCTGATCGCAGATTTTTCACAAGTTCGCCACAAGATCTTGTGCGAATCGTGAAACAAATCTGT
GAGGGAGCCGTAAAAAAAGGGTACACACCAAAAGAGATTCAGGTTCTTTCCCCGATGTACAAGGGAAACGCGGGTGTCAA
CCAGCTAAATCAGGAACTGCAGGATTTGTTTAACCCAAAGACGGAGCAAAAGCGGGAAGTTTCGTATGGAGAGACTGTGT
TCCGCACCGGTGACAAAGTGCTGCAGTTGGTCAACAACGCCGAGGAGCAGGTGTACAACGGTGACATTGGCGAAATCGTC
GCTATTTTTCGCCCCAACGAAAATGAGCAGCAGGAGGAACTGCTGGTGGTTTTGTTTGACGGCAAAGAGGTGGCCTACAA
ACGTTCGCAGTACCATCAACTAACCTTGGCTTACTGCTGTTCTGTGCACAAGTCGCAGGGAAGCGAGTTCCCGATCGTGA
TCATGCCGTTTGTCCGTCAATACTACCGCATGCTTCGGCGTAAACTGGTATACACCGGGGTAACACGCAGCAAATCGTAT
CTTTTGCTCTGCGGGGACCCCGAGGCCTTTCGTCTGGCCGTTGAAAACGACGATGAAAGTGTACGCCACACCTATCTGCG
ACAGCGACTTGTAGGTCAGGAAACCGACTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(677-724)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-246)

AAA domain (AAA_30)

(341-534)

Helix-hairpin-helix domain (HHH_5)

(106-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.335

99.471

0.491