Detailed information
Bioinformatically predicted
Overview
| Name | rarA | Type | Machinery gene |
| Locus tag | AA2Tth_RS09985 | Genome accession | NZ_AP019792 |
| Coordinates | 1844743..1846008 (+) | Length | 421 a.a. |
| NCBI ID | WP_143586772.1 | Uniprot ID | - |
| Organism | Thermus thermophilus strain AA2-20 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1839743..1851008
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AA2Tth_RS09960 (TthAA220_19510) | folE | 1841129..1841752 (-) | 624 | WP_011173891.1 | GTP cyclohydrolase I FolE | - |
| AA2Tth_RS09965 (TthAA220_19520) | - | 1841791..1842483 (-) | 693 | WP_011173892.1 | gamma carbonic anhydrase family protein | - |
| AA2Tth_RS09970 (TthAA220_19530) | - | 1842464..1842844 (-) | 381 | WP_143586766.1 | NUDIX hydrolase | - |
| AA2Tth_RS09975 (TthAA220_19540) | - | 1842835..1843698 (-) | 864 | WP_143586768.1 | DUF1028 domain-containing protein | - |
| AA2Tth_RS09980 (TthAA220_19550) | - | 1844035..1844712 (-) | 678 | WP_172619217.1 | hypothetical protein | - |
| AA2Tth_RS09985 (TthAA220_19560) | rarA | 1844743..1846008 (+) | 1266 | WP_143586772.1 | replication-associated recombination protein A | Machinery gene |
| AA2Tth_RS09990 (TthAA220_19570) | - | 1845959..1846528 (-) | 570 | WP_143586774.1 | hypothetical protein | - |
| AA2Tth_RS09995 (TthAA220_19580) | - | 1846555..1847340 (-) | 786 | WP_143586776.1 | carbohydrate ABC transporter permease | - |
| AA2Tth_RS10000 (TthAA220_19590) | - | 1847371..1848549 (+) | 1179 | Protein_1947 | CoA transferase | - |
| AA2Tth_RS10010 (TthAA220_19600) | - | 1848673..1849551 (+) | 879 | WP_143586778.1 | ABC transporter ATP-binding protein | - |
| AA2Tth_RS10015 (TthAA220_19610) | - | 1849544..1850314 (+) | 771 | WP_143586779.1 | ABC transporter permease | - |
Sequence
Protein
Download Length: 421 a.a. Molecular weight: 46062.86 Da Isoelectric Point: 8.3250
>NTDB_id=62813 AA2Tth_RS09985 WP_143586772.1 1844743..1846008(+) (rarA) [Thermus thermophilus strain AA2-20]
MGEVEPLAERLRPRSLDEVLGQPHLTGPKGLLRRMLEAGRLSSMVLFGPPGTGKTTLARLLAEGVGRPFLRLSAVEAGLK
EVRQAVEEARAKGGLVLFLDEIHRFNKAQQDALLPHLESGLLTLIGATAENPAFALVPALRSRLRFFPLRPLEEADLLAL
LKRALEDPRGLPGTPYEEEALRVLAQAAGGDARFALNTLELAASFGRVDLKSVREALGAERFGMDREGDRFYDLVSALHK
SLRGNHVDAALYYLARLLQGGADPRYLARRLIRVAVEDVGLADPLALRLAVAAKEAYEALGSPEGELALVEAAVYLALAP
KSNSLYAAWKKAQEAAKAHPEAEVPLNLRNAPTGLARALGHGEGYAYYHEDKEGSFAQRYLPEGLEGLTLFEATGEGWEE
RVRERLKALRERFQAARRRRG
MGEVEPLAERLRPRSLDEVLGQPHLTGPKGLLRRMLEAGRLSSMVLFGPPGTGKTTLARLLAEGVGRPFLRLSAVEAGLK
EVRQAVEEARAKGGLVLFLDEIHRFNKAQQDALLPHLESGLLTLIGATAENPAFALVPALRSRLRFFPLRPLEEADLLAL
LKRALEDPRGLPGTPYEEEALRVLAQAAGGDARFALNTLELAASFGRVDLKSVREALGAERFGMDREGDRFYDLVSALHK
SLRGNHVDAALYYLARLLQGGADPRYLARRLIRVAVEDVGLADPLALRLAVAAKEAYEALGSPEGELALVEAAVYLALAP
KSNSLYAAWKKAQEAAKAHPEAEVPLNLRNAPTGLARALGHGEGYAYYHEDKEGSFAQRYLPEGLEGLTLFEATGEGWEE
RVRERLKALRERFQAARRRRG
Nucleotide
Download Length: 1266 bp
>NTDB_id=62813 AA2Tth_RS09985 WP_143586772.1 1844743..1846008(+) (rarA) [Thermus thermophilus strain AA2-20]
ATGGGGGAAGTGGAACCCCTGGCCGAGCGCCTCAGGCCCCGAAGCTTAGACGAGGTCCTGGGCCAGCCCCACCTCACCGG
CCCCAAGGGGCTTCTGAGGCGGATGCTGGAGGCGGGGCGGCTCTCCTCCATGGTCCTCTTCGGCCCCCCGGGCACGGGCA
AGACCACCCTGGCCCGGCTCCTCGCCGAGGGGGTGGGGAGGCCCTTCCTAAGGCTCTCCGCGGTGGAGGCGGGGCTTAAG
GAGGTGCGCCAGGCGGTGGAGGAGGCCAGGGCAAAGGGGGGTCTCGTCCTCTTCCTGGACGAGATCCACCGCTTCAACAA
GGCCCAGCAGGACGCCCTCCTCCCCCACCTGGAGTCGGGCCTCCTCACCCTCATCGGGGCCACGGCGGAAAACCCCGCCT
TCGCCCTCGTCCCCGCCCTCCGCTCCCGCCTCCGCTTCTTCCCCTTGAGGCCCCTGGAGGAGGCCGACCTCCTCGCCCTC
CTCAAGCGGGCCCTGGAGGACCCAAGGGGCCTTCCCGGCACGCCCTACGAGGAGGAGGCCCTAAGGGTTCTCGCCCAGGC
GGCCGGGGGCGACGCCCGCTTCGCCCTGAACACCCTGGAGCTCGCCGCAAGCTTCGGCCGGGTGGACCTCAAGAGCGTGC
GGGAGGCCCTGGGGGCGGAGCGCTTCGGCATGGACCGGGAAGGGGACCGGTTTTACGACCTGGTCTCCGCCCTCCACAAG
TCCCTGCGGGGAAACCACGTGGACGCCGCCCTCTACTACCTGGCGAGGCTCCTTCAGGGCGGGGCCGACCCCCGCTACCT
CGCCCGCAGGCTCATCCGGGTGGCGGTGGAGGACGTGGGCCTCGCCGACCCCCTGGCCCTCCGCCTCGCCGTGGCCGCCA
AGGAGGCCTACGAGGCCCTGGGAAGCCCGGAAGGGGAGCTCGCCCTGGTGGAGGCCGCCGTCTACCTGGCCCTGGCCCCC
AAGAGCAACAGCCTCTACGCCGCCTGGAAAAAGGCCCAGGAGGCGGCCAAGGCCCACCCCGAGGCCGAGGTCCCCCTGAA
CCTGAGAAACGCCCCCACCGGCCTCGCCCGCGCCCTGGGGCACGGGGAGGGGTACGCCTACTACCACGAGGACAAGGAGG
GAAGCTTCGCCCAGAGGTACCTCCCTGAGGGCCTGGAAGGCCTCACCCTCTTTGAGGCCACGGGGGAGGGGTGGGAGGAG
CGGGTGCGGGAAAGGCTCAAGGCGCTTCGGGAGCGGTTCCAAGCCGCCAGGCGGCGGAGAGGCTGA
ATGGGGGAAGTGGAACCCCTGGCCGAGCGCCTCAGGCCCCGAAGCTTAGACGAGGTCCTGGGCCAGCCCCACCTCACCGG
CCCCAAGGGGCTTCTGAGGCGGATGCTGGAGGCGGGGCGGCTCTCCTCCATGGTCCTCTTCGGCCCCCCGGGCACGGGCA
AGACCACCCTGGCCCGGCTCCTCGCCGAGGGGGTGGGGAGGCCCTTCCTAAGGCTCTCCGCGGTGGAGGCGGGGCTTAAG
GAGGTGCGCCAGGCGGTGGAGGAGGCCAGGGCAAAGGGGGGTCTCGTCCTCTTCCTGGACGAGATCCACCGCTTCAACAA
GGCCCAGCAGGACGCCCTCCTCCCCCACCTGGAGTCGGGCCTCCTCACCCTCATCGGGGCCACGGCGGAAAACCCCGCCT
TCGCCCTCGTCCCCGCCCTCCGCTCCCGCCTCCGCTTCTTCCCCTTGAGGCCCCTGGAGGAGGCCGACCTCCTCGCCCTC
CTCAAGCGGGCCCTGGAGGACCCAAGGGGCCTTCCCGGCACGCCCTACGAGGAGGAGGCCCTAAGGGTTCTCGCCCAGGC
GGCCGGGGGCGACGCCCGCTTCGCCCTGAACACCCTGGAGCTCGCCGCAAGCTTCGGCCGGGTGGACCTCAAGAGCGTGC
GGGAGGCCCTGGGGGCGGAGCGCTTCGGCATGGACCGGGAAGGGGACCGGTTTTACGACCTGGTCTCCGCCCTCCACAAG
TCCCTGCGGGGAAACCACGTGGACGCCGCCCTCTACTACCTGGCGAGGCTCCTTCAGGGCGGGGCCGACCCCCGCTACCT
CGCCCGCAGGCTCATCCGGGTGGCGGTGGAGGACGTGGGCCTCGCCGACCCCCTGGCCCTCCGCCTCGCCGTGGCCGCCA
AGGAGGCCTACGAGGCCCTGGGAAGCCCGGAAGGGGAGCTCGCCCTGGTGGAGGCCGCCGTCTACCTGGCCCTGGCCCCC
AAGAGCAACAGCCTCTACGCCGCCTGGAAAAAGGCCCAGGAGGCGGCCAAGGCCCACCCCGAGGCCGAGGTCCCCCTGAA
CCTGAGAAACGCCCCCACCGGCCTCGCCCGCGCCCTGGGGCACGGGGAGGGGTACGCCTACTACCACGAGGACAAGGAGG
GAAGCTTCGCCCAGAGGTACCTCCCTGAGGGCCTGGAAGGCCTCACCCTCTTTGAGGCCACGGGGGAGGGGTGGGAGGAG
CGGGTGCGGGAAAGGCTCAAGGCGCTTCGGGAGCGGTTCCAAGCCGCCAGGCGGCGGAGAGGCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rarA | Bacillus subtilis subsp. subtilis str. 168 |
38.242 |
100 |
0.382 |