Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PALA1_RS02460 Genome accession   NZ_CP104254
Coordinates   538951..539676 (-) Length   241 a.a.
NCBI ID   WP_004365178.1    Uniprot ID   A0A0H2ZL31
Organism   Pseudomonas aeruginosa strain PALA1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 533951..544676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA1_RS02435 (PALA1_00485) - 534423..534938 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  PALA1_RS02440 (PALA1_00486) rarD 535628..536524 (-) 897 WP_003103301.1 EamA family transporter RarD -
  PALA1_RS02445 (PALA1_00487) - 536727..537701 (-) 975 WP_269972733.1 serine/threonine protein kinase -
  PALA1_RS02450 (PALA1_00488) - 537763..538521 (-) 759 WP_003084796.1 TOBE domain-containing protein -
  PALA1_RS02455 (PALA1_00489) - 538589..538909 (-) 321 WP_004365177.1 YfiM family lipoprotein -
  PALA1_RS02460 (PALA1_00490) comF 538951..539676 (-) 726 WP_004365178.1 ComF family protein Machinery gene
  PALA1_RS02465 (PALA1_00491) - 539815..540108 (-) 294 WP_003084806.1 hypothetical protein -
  PALA1_RS02470 (PALA1_00492) - 540162..541088 (-) 927 WP_003129068.1 LysR family transcriptional regulator -
  PALA1_RS02475 (PALA1_00493) - 541206..541964 (+) 759 WP_003111232.1 5-oxoprolinase subunit PxpA -
  PALA1_RS02480 (PALA1_00494) - 542041..542289 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  PALA1_RS02485 (PALA1_00495) - 542300..543676 (+) 1377 WP_003084815.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  PALA1_RS02490 (PALA1_00496) - 543678..544556 (+) 879 WP_021263093.1 5-oxoprolinase subunit B family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27019.49 Da        Isoelectric Point: 11.0325

>NTDB_id=627669 PALA1_RS02460 WP_004365178.1 538951..539676(-) (comF) [Pseudomonas aeruginosa strain PALA1]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRSDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAECLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=627669 PALA1_RS02460 WP_004365178.1 538951..539676(-) (comF) [Pseudomonas aeruginosa strain PALA1]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCACCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGGCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCCGGCGAGCTGGACCTGCGCAGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACGCCGGCCCAGCAGGGGCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGTGCCTTTCCCGTCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Double zinc ribbon domain (DZR_2)

(9-65)

Phosphoribosyl transferase domain (Pribosyltran)

(137-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZL31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382