Detailed information NTG0062765

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AA2Tth_RS00625
• Genome accession: NZ_AP019792
• Coordinates: 114207..115277 (+)
• Length: 356 a.a.
• NCBI ID: WP_143584238.1
• Uniprot ID: -
• Organism: Thermus thermophilus strain AA2-20
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 109207..120277

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AA2Tth_RS00605 (TthAA220_01160)	-	109704..110486 (+)	783	WP_143584233.1	RNA methyltransferase	-
AA2Tth_RS00610 (TthAA220_01170)	groES	110584..110889 (+)	306	WP_011174076.1	co-chaperone GroES	-
AA2Tth_RS00615 (TthAA220_01180)	groL	110902..112533 (+)	1632	WP_011174077.1	chaperonin GroEL	-
AA2Tth_RS00620 (TthAA220_01190)	-	112597..114129 (-)	1533	WP_143584236.1	thermostable carboxypeptidase 1	-
AA2Tth_RS00625 (TthAA220_01200)	pilD	114207..115277 (+)	1071	WP_143584238.1	A24 family peptidase	Machinery gene
AA2Tth_RS00630 (TthAA220_01210)	-	115315..115818 (+)	504	WP_143584241.1	DUF2939 domain-containing protein	-
AA2Tth_RS00635 (TthAA220_01220)	-	115832..116752 (+)	921	WP_143584244.1	nitroreductase family protein	-
AA2Tth_RS00640 (TthAA220_01230)	-	116706..117503 (-)	798	WP_143584247.1	C40 family peptidase	-
AA2Tth_RS00645 (TthAA220_01240)	-	117504..118262 (-)	759	WP_041443621.1	DUF721 domain-containing protein	-
AA2Tth_RS00650 (TthAA220_01250)	recF	118247..119278 (-)	1032	WP_143584250.1	DNA replication and repair protein RecF	Machinery gene

Sequence

Protein

• Length: 356 a.a.
• Molecular weight: 38081.42 Da
• Isoelectric Point: 7.7132

>NTDB_id=62765 AA2Tth_RS00625 WP_143584238.1 114207..115277(+) (pilD) [Thermus thermophilus strain AA2-20]
MWPLLALVLGLVVGSFLNVVIHRLPRGESVVYPPSRCPQCGHRLGPWDLVPVLSYLALKGRCRYCARPISPRYPLVEALT
GGLFLLASLFYPPGVEALLVFLFLAFLVALAFIDVDTFELPDLLTYGLLFLGLLASWALAFPLPFRESLDGSLMAAGGLA
LVAGYGNFFLRRFKEGRAEVPVGPHQVHMAALFGALLGPGVGMALAFLAWALSARTGRAVAFPDRLTLPLLPLAFLLAPA
LGLDFLESLKGSLLAAGGLALAGGLYWAFRPLPEEGEEEEPVAMGYGDVKLLGALGAWLGPYAFLALFLGVFAGALLGLL
LRQRKLPFGPYLALGGVVAFFFGEALWGAYLRLLGV

Nucleotide

• Length: 1071 bp

>NTDB_id=62765 AA2Tth_RS00625 WP_143584238.1 114207..115277(+) (pilD) [Thermus thermophilus strain AA2-20]
ATGTGGCCCCTTCTCGCCCTGGTCCTCGGCCTCGTGGTGGGCTCCTTTTTGAACGTGGTCATCCACCGCCTGCCCCGGGG
GGAGTCCGTCGTCTACCCCCCATCCCGCTGCCCCCAGTGCGGCCACCGCCTGGGGCCTTGGGACCTGGTCCCCGTCCTCT
CCTACCTCGCCCTAAAGGGGCGGTGCCGCTACTGCGCCCGTCCCATCTCCCCCCGCTACCCCCTGGTGGAGGCCCTCACG
GGGGGGCTTTTTCTCCTCGCAAGCCTCTTCTACCCCCCTGGGGTGGAGGCCCTCTTGGTCTTCCTCTTCCTCGCCTTTCT
CGTGGCCCTCGCCTTCATTGACGTGGACACCTTTGAGCTTCCCGATCTCCTCACCTACGGCCTCCTCTTCCTTGGGCTTT
TGGCCTCCTGGGCGCTGGCCTTCCCCCTCCCCTTTAGGGAGAGCCTGGACGGAAGCCTCATGGCCGCCGGGGGGCTCGCC
CTGGTGGCGGGTTACGGGAACTTTTTCCTGAGGCGCTTTAAGGAGGGGAGGGCCGAGGTTCCCGTGGGGCCCCACCAGGT
CCACATGGCGGCCCTCTTCGGGGCGCTCTTGGGCCCAGGGGTGGGGATGGCCCTCGCCTTCCTCGCCTGGGCCCTCTCCG
CCCGCACGGGGCGGGCGGTGGCCTTCCCCGACCGGCTCACCCTGCCCCTTTTGCCTCTCGCCTTCCTCCTTGCCCCCGCC
CTAGGCCTGGACTTCCTGGAAAGCCTTAAGGGAAGCCTCCTCGCTGCCGGGGGGCTCGCCCTCGCCGGCGGGCTTTACTG
GGCCTTCCGGCCCCTTCCCGAGGAGGGCGAGGAGGAGGAGCCCGTGGCCATGGGCTACGGGGACGTGAAGCTTCTGGGGG
CCCTCGGGGCCTGGCTTGGCCCTTACGCCTTCCTCGCCCTCTTCCTCGGGGTCTTCGCCGGGGCGCTTCTGGGCCTTCTC
CTTAGGCAAAGGAAGCTCCCCTTCGGCCCCTACCTCGCCCTCGGGGGGGTGGTGGCCTTCTTCTTCGGGGAGGCCCTCTG
GGGGGCGTACCTGCGCCTTCTGGGCGTTTGA

Domains

Predicted by InterProScan.

• Type IV leader peptidase family (Peptidase_A24) (102-209)

• Type IV leader peptidase family (Peptidase_A24) (219-319)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (8-88)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	44.386	100	0.478