Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   EC110512_RS20975 Genome accession   NZ_AP019761
Coordinates   4054335..4054802 (+) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli O111:H- strain 110512     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4049335..4059802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EC110512_RS20930 (EC110512_C39790) rplP 4049445..4049855 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  EC110512_RS20935 (EC110512_C39800) rpsC 4049868..4050569 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  EC110512_RS20940 (EC110512_C39810) rplV 4050587..4050919 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  EC110512_RS20945 (EC110512_C39820) rpsS 4050934..4051212 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  EC110512_RS20950 (EC110512_C39830) rplB 4051229..4052050 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  EC110512_RS20955 (EC110512_C39840) rplW 4052068..4052370 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  EC110512_RS20960 (EC110512_C39850) rplD 4052367..4052972 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  EC110512_RS20965 (EC110512_C39860) rplC 4052983..4053612 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  EC110512_RS20970 (EC110512_C39870) rpsJ 4053645..4053956 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  EC110512_RS20975 (EC110512_C39880) pilD 4054335..4054802 (+) 468 WP_000339836.1 A24 family peptidase Machinery gene
  EC110512_RS20980 (EC110512_C39890) bfr 4054799..4055275 (-) 477 WP_000675515.1 bacterioferritin -
  EC110512_RS20985 (EC110512_C39900) bfd 4055348..4055542 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  EC110512_RS20990 (EC110512_C39910) tuf 4055725..4056909 (-) 1185 WP_000031783.1 elongation factor Tu -
  EC110512_RS20995 (EC110512_C39920) fusA 4056980..4059094 (-) 2115 WP_000124700.1 elongation factor G -
  EC110512_RS21000 (EC110512_C39930) rpsG 4059191..4059661 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=62732 EC110512_RS20975 WP_000339836.1 4054335..4054802(+) (pilD) [Escherichia coli O111:H- strain 110512]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=62732 EC110512_RS20975 WP_000339836.1 4054335..4054802(+) (pilD) [Escherichia coli O111:H- strain 110512]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTAGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361

Multiple sequence alignment