Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LNP04_RS14850 Genome accession   NZ_CP087131
Coordinates   3227322..3227825 (-) Length   167 a.a.
NCBI ID   WP_324292098.1    Uniprot ID   -
Organism   Chryseobacterium sp. C-71     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3222322..3232825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LNP04_RS14820 (LNP04_14820) - 3222626..3223291 (-) 666 WP_229983693.1 DUF4290 domain-containing protein -
  LNP04_RS14825 (LNP04_14825) - 3223408..3223821 (-) 414 WP_229983694.1 thiol-disulfide oxidoreductase DCC family protein -
  LNP04_RS14830 (LNP04_14830) - 3223830..3224294 (-) 465 Protein_2911 heme-binding domain-containing protein -
  LNP04_RS14835 (LNP04_14835) der 3224522..3225832 (+) 1311 WP_229983695.1 ribosome biogenesis GTPase Der -
  LNP04_RS14840 (LNP04_14840) upp 3225938..3226588 (+) 651 WP_229983696.1 uracil phosphoribosyltransferase -
  LNP04_RS14845 (LNP04_14845) - 3226589..3227278 (-) 690 WP_229983697.1 alpha/beta fold hydrolase -
  LNP04_RS14850 (LNP04_14850) comF 3227322..3227825 (-) 504 WP_324292098.1 phosphoribosyltransferase family protein Machinery gene
  LNP04_RS19605 - 3227919..3228158 (-) 240 Protein_2916 hypothetical protein -
  LNP04_RS14855 (LNP04_14855) - 3228072..3228518 (+) 447 WP_047445211.1 6-carboxytetrahydropterin synthase -
  LNP04_RS14860 (LNP04_14860) - 3228543..3229316 (+) 774 WP_229983698.1 UDP-2,3-diacylglucosamine diphosphatase -
  LNP04_RS14865 (LNP04_14865) - 3229514..3230509 (+) 996 WP_229983699.1 acyl transferase -
  LNP04_RS14870 (LNP04_14870) - 3230766..3231311 (+) 546 WP_229983700.1 hypothetical protein -
  LNP04_RS14875 (LNP04_14875) aqpZ 3231364..3232080 (-) 717 WP_229983701.1 aquaporin Z -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 19549.59 Da        Isoelectric Point: 9.8248

>NTDB_id=626766 LNP04_RS14850 WP_324292098.1 3227322..3227825(-) (comF) [Chryseobacterium sp. C-71]
MLFPIENAYALMQFEQENLSRKIIHQLKYKSREKTGKTVADWVTERLDFKSEKPDLLISVPLHPKKEKERGYNQLHLFTK
ALSDFYGIPFEHYLLKRNHYSKAQALKDKKHRLETQNTFSLTKKISNQHVLLIDDVFTTGNTLATIAWEILKEGNNKVSV
LVMAMDE

Nucleotide


Download         Length: 504 bp        

>NTDB_id=626766 LNP04_RS14850 WP_324292098.1 3227322..3227825(-) (comF) [Chryseobacterium sp. C-71]
TTGCTTTTCCCAATAGAAAATGCCTATGCTTTGATGCAATTTGAACAGGAAAATCTCAGCAGAAAAATCATTCATCAATT
AAAATACAAAAGTCGGGAGAAGACCGGAAAAACTGTTGCAGATTGGGTGACAGAAAGATTAGATTTTAAAAGCGAAAAGC
CGGATTTATTGATAAGTGTCCCACTCCATCCGAAGAAAGAAAAGGAAAGAGGCTACAATCAATTACATTTGTTCACCAAA
GCACTTTCTGATTTTTATGGAATTCCATTTGAGCATTATTTACTGAAGCGAAATCATTACTCAAAAGCTCAAGCGTTGAA
AGATAAAAAACACCGTTTGGAAACTCAAAATACTTTTTCCCTGACCAAAAAGATTTCTAATCAACATGTTTTACTGATCG
ATGATGTTTTCACGACTGGAAATACTTTAGCTACAATTGCATGGGAAATTTTGAAAGAAGGAAATAATAAAGTGAGCGTC
TTGGTAATGGCGATGGATGAATAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(81-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

56.97

98.802

0.563