Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   N2A96_RS08730 Genome accession   NZ_CP104047
Coordinates   1723720..1726056 (-) Length   778 a.a.
NCBI ID   WP_003107619.1    Uniprot ID   -
Organism   Streptococcus parauberis strain KSP10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1718720..1731056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2A96_RS08700 (N2A96_08700) rpsR 1719555..1719794 (-) 240 WP_003102945.1 30S ribosomal protein S18 -
  N2A96_RS08705 (N2A96_08705) ssb 1719883..1720380 (-) 498 WP_003103409.1 single-stranded DNA-binding protein Machinery gene
  N2A96_RS08710 (N2A96_08710) rpsF 1720401..1720691 (-) 291 WP_003104479.1 30S ribosomal protein S6 -
  N2A96_RS08715 (N2A96_08715) mutY 1721677..1722816 (+) 1140 WP_037622077.1 A/G-specific adenine glycosylase -
  N2A96_RS08720 (N2A96_08720) - 1722894..1723256 (+) 363 WP_003105722.1 hypothetical protein -
  N2A96_RS08725 (N2A96_08725) trxA 1723298..1723612 (-) 315 WP_003102914.1 thioredoxin -
  N2A96_RS08730 (N2A96_08730) mutS/mutS2 1723720..1726056 (-) 2337 WP_003107619.1 endonuclease MutS2 Machinery gene
  N2A96_RS08735 (N2A96_08735) - 1726123..1726668 (-) 546 WP_003107621.1 CvpA family protein -
  N2A96_RS08740 (N2A96_08740) zapA 1726671..1726979 (-) 309 WP_003105645.1 cell division protein ZapA -
  N2A96_RS08745 (N2A96_08745) rnhC 1727098..1728012 (+) 915 WP_037620056.1 ribonuclease HIII -
  N2A96_RS08750 (N2A96_08750) lepB 1728021..1728614 (+) 594 WP_003107623.1 signal peptidase I -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87655.52 Da        Isoelectric Point: 6.6679

>NTDB_id=626662 N2A96_RS08730 WP_003107619.1 1723720..1726056(-) (mutS/mutS2) [Streptococcus parauberis strain KSP10]
MDIKILEQLEFQKVKEQFQTYLQTEQGKVELQQLVPTDNPEKIKDYFTEISEMEMIFIENHHFAMGSLRDVNDSLHRLEL
DADLNISELLDIKKLLLVSAEASRFFMNLENVELVALKKLFEKLEIFPQLQGSLQAINDGAFIENFASPELEAIRRKIFN
SEHQIRQSLQDVLKKHADYLSESLIASRNGRSVLPVKNTFRNKIAGVVHDISASGNTVYIEPRALVQLNEEITQLHADER
HEMARILKELSAMVRPHSRALANNAWLLGHLDFVRAKYLYMKEKKATIPTVTADKSVQLLNVRHPLLQKPVPNDLHFSKD
LTVIVITGPNTGGKTIMLKTLGLAQLMGQSGLPILADYGSKIAVFNGIFADIGDEQSIEQSLSTFSSHMTHIVSIIDQAT
ADSLVLFDELGAGTDPQEGASLAMAILEELRLKEIKTMATTHYPELKAYGIESEFVENASMEFDSNSLQPTYRFMQGVPG
RSNAFEIARRLGLASHIVTDAQNFTDTDSDVNRIIEKLESQTLESRKRLEHIKEVEQDNLKFNRAVKKLYNEFSHERDKE
MEKVTKEAQEIVDLALAESESILAKLHDKSQLKPHEVIEAKTQLKKLVPQTDLSKNKVLKQAKKLRAARVGDDIIVSAYG
QRGTLINQLKDQKWEAQVGLIKMTLKEDEFTLVKAVEESQKPKKQMVNVIKKAATGSGPRARLDLRGKRYEEAMQELDTF
IDQALVNNMSQVDIIHGIGTGVIREAVTKYLRRNKHVKSFAYAPQNAGGSGCTIVTLG

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=626662 N2A96_RS08730 WP_003107619.1 1723720..1726056(-) (mutS/mutS2) [Streptococcus parauberis strain KSP10]
ATGGATATAAAAATTTTAGAACAGTTAGAATTTCAAAAGGTTAAAGAACAATTTCAAACCTACCTTCAAACTGAACAAGG
GAAAGTGGAACTCCAACAGCTAGTTCCAACAGACAATCCCGAAAAGATTAAAGATTATTTTACGGAAATTTCAGAAATGG
AGATGATTTTCATTGAGAATCATCATTTTGCCATGGGGAGCTTACGGGATGTTAATGACAGCCTCCACCGCCTTGAGTTG
GATGCTGATTTGAACATTTCGGAACTCTTAGATATCAAAAAACTCTTGCTTGTCTCTGCCGAAGCCAGTCGTTTTTTTAT
GAATTTAGAAAATGTTGAATTGGTTGCCCTAAAAAAATTATTTGAGAAATTAGAAATTTTTCCTCAGTTGCAGGGAAGCC
TGCAAGCCATCAACGATGGGGCCTTCATAGAAAATTTTGCCAGTCCAGAATTGGAAGCCATCCGTCGCAAGATTTTTAAT
AGTGAACACCAAATTCGTCAATCGCTTCAGGATGTGCTCAAGAAACATGCTGACTATCTGTCAGAATCATTGATTGCCAG
TCGGAACGGCCGTAGCGTGCTTCCGGTTAAAAACACCTTTAGAAACAAAATCGCAGGGGTTGTCCACGATATCTCAGCAT
CTGGGAATACAGTCTATATTGAACCACGAGCTTTGGTCCAATTAAATGAAGAAATAACCCAGTTGCATGCTGATGAACGT
CATGAAATGGCACGGATTCTTAAAGAACTCTCAGCCATGGTTCGTCCACATAGTCGTGCTCTTGCCAATAATGCTTGGTT
ACTAGGACATTTAGATTTTGTTCGAGCAAAATATCTTTATATGAAGGAGAAGAAGGCGACTATTCCAACTGTCACTGCTG
ATAAATCAGTGCAATTGTTGAATGTTCGTCATCCTCTCTTGCAAAAGCCAGTTCCTAATGACCTACACTTTTCTAAAGAC
TTAACAGTTATTGTTATTACGGGTCCTAATACGGGTGGTAAGACAATCATGTTAAAAACCCTTGGTTTGGCTCAGTTAAT
GGGACAGTCTGGTTTGCCAATTCTAGCTGACTACGGTTCGAAGATTGCTGTTTTCAATGGAATTTTTGCCGATATTGGCG
ATGAGCAATCGATTGAACAAAGCTTGTCGACCTTCTCTAGTCATATGACCCACATTGTGTCAATTATTGACCAAGCGACA
GCAGATAGTCTAGTTCTCTTTGATGAACTAGGTGCTGGTACCGATCCGCAAGAAGGTGCTAGCTTAGCGATGGCCATTCT
AGAAGAACTTCGCTTGAAAGAAATCAAGACCATGGCGACGACCCATTATCCTGAGTTGAAAGCTTACGGGATTGAGTCGG
AGTTTGTTGAAAATGCTAGTATGGAGTTTGATAGTAATAGTCTTCAGCCAACCTATCGTTTTATGCAAGGCGTGCCTGGT
CGTTCTAATGCTTTTGAAATTGCAAGACGGTTGGGCCTAGCCAGTCATATTGTGACGGACGCTCAGAATTTTACTGATAC
GGATAGTGACGTCAATCGGATTATTGAAAAGTTAGAAAGTCAGACTTTGGAGAGTCGGAAACGTCTTGAACATATTAAAG
AGGTCGAGCAGGATAACCTTAAGTTCAATCGTGCTGTTAAAAAGCTGTATAATGAGTTTTCTCATGAGCGTGATAAGGAA
ATGGAAAAGGTTACTAAAGAGGCGCAAGAGATTGTTGATTTGGCCTTGGCGGAAAGTGAGTCTATCTTAGCTAAGTTACA
TGACAAGTCGCAATTGAAACCACATGAAGTCATTGAAGCTAAGACACAATTGAAAAAGTTAGTACCTCAAACTGATTTAT
CCAAAAATAAAGTTTTGAAACAGGCTAAGAAGTTAAGAGCTGCGCGTGTTGGTGATGATATCATTGTTTCTGCATATGGT
CAACGTGGTACTTTAATTAATCAATTAAAAGATCAAAAATGGGAAGCACAAGTGGGGTTAATTAAAATGACCCTCAAAGA
GGATGAATTTACCTTGGTTAAGGCTGTTGAAGAAAGCCAGAAACCTAAAAAACAAATGGTTAATGTCATTAAGAAAGCAG
CAACAGGTTCTGGACCTAGAGCCCGTCTTGACTTACGTGGCAAACGTTATGAAGAAGCCATGCAAGAGCTGGATACCTTT
ATTGACCAAGCTTTAGTTAATAACATGAGTCAAGTTGATATCATTCATGGGATTGGTACTGGGGTTATTCGTGAAGCAGT
TACTAAATATTTGAGACGCAACAAACATGTTAAGAGTTTTGCTTACGCTCCGCAAAATGCGGGAGGGTCAGGTTGTACAA
TTGTGACCTTGGGTTAG

Domains

Predicted by InterProScan.

MutS domain V (MutS_V)

(324-505)

Smr domain (Smr)

(703-777)

MutS2 and Smr-associated SH3 domain (MSSS)

(630-669)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

39.163

100

0.397