Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BAPNAU_RS11265 Genome accession   NC_022530
Coordinates   2325947..2326726 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis NAU-B3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2320947..2331726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAPNAU_RS11235 (BAPNAU_2145) fliH 2320991..2321746 (-) 756 WP_022553345.1 flagellar assembly protein FliH -
  BAPNAU_RS11240 (BAPNAU_2146) fliG 2321739..2322755 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  BAPNAU_RS11245 (BAPNAU_2147) fliF 2322768..2324378 (-) 1611 WP_022553346.1 flagellar basal-body MS-ring/collar protein FliF -
  BAPNAU_RS11250 (BAPNAU_2148) fliE 2324421..2324741 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  BAPNAU_RS11255 (BAPNAU_2149) flgC 2324752..2325204 (-) 453 WP_022553347.1 flagellar basal body rod protein FlgC -
  BAPNAU_RS11260 (BAPNAU_2150) flgB 2325204..2325593 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  BAPNAU_RS11265 (BAPNAU_2151) codY 2325947..2326726 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BAPNAU_RS11270 (BAPNAU_2152) hslU 2326764..2328167 (-) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  BAPNAU_RS11275 (BAPNAU_2153) hslV 2328184..2328729 (-) 546 WP_022553348.1 ATP-dependent protease subunit HslV -
  BAPNAU_RS11280 (BAPNAU_2154) xerC 2328745..2329611 (-) 867 WP_050436825.1 tyrosine recombinase XerC -
  BAPNAU_RS11285 (BAPNAU_2155) trmFO 2329731..2331038 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=62664 BAPNAU_RS11265 WP_003154263.1 2325947..2326726(-) (codY) [Bacillus velezensis NAU-B3]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=62664 BAPNAU_RS11265 WP_003154263.1 2325947..2326726(-) (codY) [Bacillus velezensis NAU-B3]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCAGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment