Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   HQN46_RS21625 Genome accession   NZ_CP087103
Coordinates   4215223..4217544 (-) Length   773 a.a.
NCBI ID   WP_085450577.1    Uniprot ID   -
Organism   Bacillus toyonensis strain HA0190     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4210223..4222544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN46_RS21595 (HQN46_0021595) - 4210658..4210834 (-) 177 WP_001242605.1 hypothetical protein -
  HQN46_RS21600 (HQN46_0021600) - 4210920..4211111 (-) 192 WP_001104580.1 hypothetical protein -
  HQN46_RS21605 (HQN46_0021605) - 4211191..4211523 (-) 333 Protein_4216 YrdB family protein -
  HQN46_RS21610 (HQN46_0021610) - 4211793..4212233 (-) 441 WP_001266954.1 D-tyrosyl-tRNA(Tyr) deacylase -
  HQN46_RS21615 (HQN46_0021615) relA 4212251..4214434 (-) 2184 WP_001262805.1 GTP diphosphokinase -
  HQN46_RS21620 (HQN46_0021620) - 4214645..4215157 (-) 513 WP_000346217.1 adenine phosphoribosyltransferase -
  HQN46_RS21625 (HQN46_0021625) recJ 4215223..4217544 (-) 2322 WP_085450577.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  HQN46_RS21630 (HQN46_0021630) - 4217646..4218539 (-) 894 WP_000409732.1 cation diffusion facilitator family transporter -
  HQN46_RS21635 (HQN46_0021635) secDF 4218704..4220968 (-) 2265 WP_085450576.1 protein translocase subunit SecDF -
  HQN46_RS21640 (HQN46_0021640) - 4221251..4221535 (-) 285 WP_000890217.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 773 a.a.        Molecular weight: 87542.99 Da        Isoelectric Point: 5.0354

>NTDB_id=626622 HQN46_RS21625 WP_085450577.1 4215223..4217544(-) (recJ) [Bacillus toyonensis strain HA0190]
MLQPKTRWKEKEYNEERVSELANKLQLSPLVISLFLGRGLDTEDKILDFLNTENQEFHDPFLLEGMDRTVERVNKAIQNG
EQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGYGPNEEAFRWAHSAEFSLIITVDTGIAAVHEAKVAKEL
GIDLIITDHHEPPPELPEALAIIHPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPEHLLEIAVIGTVADLVSLHGENRLL
VKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDATPAVHLLLSDDPEEAKELAEEIDELNKL
RKDIVKQITEEAIAEVENKFPSEENKVLVLAKEGWNPGVIGIVASKLVERFYRPTIVLSIDPVKETAKGSARSIAGFDLF
ANLSDCRELLPHFGGHPMAAGMTLHMNDVDELRRRLNAQADAILTEADFIPITAVDTFCKVEDVTLAAIEDMQKLAPFGV
GNPKPRLAVKNAELESIRAIGSDGSHLKMALRDGQATLDTIGFGFGAYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQ
DIAVEAWQLFDWRSMRNVEANLAELPKEKITMVYFSEEVLNKFSLEDYKEHLVHASEVTHLDDQYIVLLDLPKGTDELRD
LFKVGFPSRIYTLFYQENNHLFSTVPTREHFKWYYSFLNQKSPFSLRQYGEQLCRHKGWSKDTVNFMTQVFFELEFVTIK
DGVIFMAEQKQKRDLIESNTYREKMNHLQLEKELVYSTYQQLYTWFETIRNHK

Nucleotide


Download         Length: 2322 bp        

>NTDB_id=626622 HQN46_RS21625 WP_085450577.1 4215223..4217544(-) (recJ) [Bacillus toyonensis strain HA0190]
GTGTTACAACCGAAGACGCGTTGGAAAGAAAAAGAATATAATGAAGAGCGAGTGAGTGAATTAGCAAATAAATTACAATT
GTCACCACTTGTCATTTCGTTATTCCTCGGTAGAGGATTAGATACAGAAGATAAGATTTTAGATTTTTTAAATACAGAAA
ATCAAGAATTTCACGATCCGTTTTTATTAGAAGGAATGGATAGAACGGTAGAACGTGTAAATAAGGCGATTCAAAATGGA
GAGCAAATATTAATATTTGGTGATTATGATGCGGACGGAGTAAGTAGTACAACGGTTTTATATCTTGCTCTGCAAGAATT
AGGTGCAGAGGTAGAATTTTATATTCCAAACCGTTTTACAGAAGGTTATGGACCGAACGAAGAAGCGTTTCGTTGGGCGC
ATAGTGCAGAGTTCTCACTTATTATTACTGTCGATACTGGTATCGCAGCGGTACATGAAGCGAAGGTAGCGAAGGAACTT
GGAATAGATCTTATTATTACGGATCACCATGAGCCACCGCCAGAATTACCAGAAGCACTCGCGATTATTCATCCAAAACT
AGATGGCGGTGTGTATCCGTTTCATTATTTAGCCGGTGTAGGTGTTGCGTTTAAAGTTGCGCATGCACTATTAGGTCGTG
TGCCAGAACATTTATTAGAAATTGCAGTAATCGGTACGGTAGCCGATTTAGTATCACTTCATGGCGAAAATAGATTGCTA
GTGAAGCGCGGTTTAAAACATATGCGGATGACGAAAAATATTGGTTTAAAGGCATTGTTTAAAGTTGCTAACGTTTCGCA
AAGTGAAATTACAGAAGAAAGCATTGGATTCTCAATCGCACCGCGTATTAATGCAGTTGGGCGTTTAGAAGATGCTACGC
CGGCTGTACACCTATTATTATCAGATGACCCAGAGGAAGCGAAAGAACTGGCTGAAGAAATTGATGAGCTGAACAAACTT
CGAAAAGATATTGTAAAGCAAATTACAGAAGAGGCTATCGCTGAAGTGGAAAATAAATTCCCATCAGAAGAAAATAAAGT
GTTAGTGCTTGCAAAAGAAGGCTGGAATCCAGGTGTAATTGGAATTGTCGCTTCTAAATTAGTTGAACGTTTTTATCGTC
CAACAATTGTATTAAGCATTGATCCTGTCAAAGAAACAGCAAAGGGTTCAGCACGTAGTATCGCGGGATTTGATTTGTTT
GCAAACTTGTCGGATTGTAGAGAGTTATTACCGCACTTCGGAGGGCATCCGATGGCCGCGGGAATGACGCTACATATGAA
TGATGTAGATGAGTTACGTCGCCGCTTAAATGCGCAAGCGGATGCAATTTTAACAGAAGCGGATTTTATTCCAATCACAG
CAGTTGATACATTTTGTAAAGTGGAAGATGTAACACTTGCAGCAATTGAGGATATGCAAAAGTTAGCGCCATTTGGTGTT
GGAAATCCGAAACCACGTCTTGCAGTGAAAAATGCTGAATTAGAAAGTATTCGTGCAATCGGATCAGATGGTTCACATTT
GAAAATGGCACTTCGTGACGGACAGGCAACACTGGATACAATTGGATTCGGATTTGGTGCGTATGCAAAAGAAATTTCGC
CAGTTGCTAAGGTATCTGTAATAGGAGAGGCATCCATTAATGAATGGAATAATTTTAAGAAGCCACAATTAATGGTACAA
GATATTGCTGTAGAGGCATGGCAATTATTTGATTGGCGTAGTATGCGTAATGTGGAAGCAAATTTAGCAGAACTTCCGAA
AGAAAAAATAACAATGGTGTATTTTTCTGAAGAGGTATTGAATAAGTTTTCTTTAGAAGACTATAAAGAACATCTTGTGC
ATGCATCAGAGGTAACTCATTTAGATGATCAATACATCGTGTTACTCGATTTGCCAAAAGGAACAGATGAATTACGTGAC
TTATTTAAAGTAGGATTCCCATCTAGAATCTATACGTTATTTTATCAAGAGAACAATCATCTATTTAGTACAGTCCCAAC
GAGGGAACATTTTAAATGGTACTATTCTTTCTTAAACCAAAAATCACCATTTTCTTTAAGACAATATGGGGAACAACTAT
GTCGCCATAAAGGTTGGTCAAAAGATACAGTAAATTTCATGACACAGGTGTTTTTTGAGTTAGAATTTGTTACAATAAAA
GACGGTGTCATTTTTATGGCCGAACAAAAACAAAAGCGTGATTTAATTGAATCGAACACATATCGTGAGAAAATGAACCA
CTTACAATTAGAAAAAGAATTGGTTTATAGCACATATCAGCAACTATATACATGGTTTGAAACGATTCGTAATCATAAAT
AA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-766)

RecJ OB domain (RecJ_OB)

(456-561)

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(315-438)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.455

100

0.525