Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   HQN46_RS18305 Genome accession   NZ_CP087103
Coordinates   3620577..3621356 (-) Length   259 a.a.
NCBI ID   WP_000421291.1    Uniprot ID   A0A1V6LJD3
Organism   Bacillus toyonensis strain HA0190     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3615577..3626356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN46_RS18280 (HQN46_0018280) uppS 3616325..3617101 (-) 777 WP_000971308.1 isoprenyl transferase -
  HQN46_RS18285 (HQN46_0018285) frr 3617187..3617744 (-) 558 WP_000531505.1 ribosome recycling factor -
  HQN46_RS18290 (HQN46_0018290) pyrH 3617747..3618469 (-) 723 WP_000042662.1 UMP kinase -
  HQN46_RS18295 (HQN46_0018295) tsf 3618536..3619423 (-) 888 WP_001018579.1 translation elongation factor Ts -
  HQN46_RS18300 (HQN46_0018300) rpsB 3619527..3620228 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  HQN46_RS18305 (HQN46_0018305) codY 3620577..3621356 (-) 780 WP_000421291.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  HQN46_RS18310 (HQN46_0018310) hslU 3621434..3622825 (-) 1392 WP_000550076.1 ATP-dependent protease ATPase subunit HslU -
  HQN46_RS18315 (HQN46_0018315) hslV 3622848..3623390 (-) 543 WP_000526274.1 ATP-dependent protease proteolytic subunit HslV -
  HQN46_RS18320 (HQN46_0018320) xerC 3623433..3624332 (-) 900 WP_001101252.1 tyrosine recombinase XerC -
  HQN46_RS18325 (HQN46_0018325) trmFO 3624398..3625702 (-) 1305 WP_000211999.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28788.03 Da        Isoelectric Point: 4.7947

>NTDB_id=626612 HQN46_RS18305 WP_000421291.1 3620577..3621356(-) (codY) [Bacillus toyonensis strain HA0190]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NVTETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=626612 HQN46_RS18305 WP_000421291.1 3620577..3621356(-) (codY) [Bacillus toyonensis strain HA0190]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAACGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAATATACGCAAAGCTTATTC
AATGTAACGGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTGTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAATACAGTTCAACTGTAGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCACATTTTCGAAGAGTTAAACGGAACAGAAGGTCTACTTGTTGCAAGTAAAATTGCTGATCGTGTAGGAATCACTC
GTTCTGTGATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATCGAGTCTCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTTTTACATGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V6LJD3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.853

100

0.819
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.275

98.456

0.456