Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   N2A93_RS08755 Genome accession   NZ_CP104046
Coordinates   1728415..1730817 (+) Length   800 a.a.
NCBI ID   WP_003107624.1    Uniprot ID   A0ABN0IQK1
Organism   Streptococcus parauberis strain KSP14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1723415..1735817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2A93_RS08730 (N2A93_08730) mutS/mutS2 1723463..1725799 (-) 2337 WP_003107619.1 endonuclease MutS2 Machinery gene
  N2A93_RS08735 (N2A93_08735) - 1725866..1726411 (-) 546 WP_003107621.1 CvpA family protein -
  N2A93_RS08740 (N2A93_08740) zapA 1726414..1726722 (-) 309 WP_003105645.1 cell division protein ZapA -
  N2A93_RS08745 (N2A93_08745) rnhC 1726841..1727755 (+) 915 WP_037620056.1 ribonuclease HIII -
  N2A93_RS08750 (N2A93_08750) lepB 1727764..1728357 (+) 594 WP_003107623.1 signal peptidase I -
  N2A93_RS08755 (N2A93_08755) recD/recD2/recDB 1728415..1730817 (+) 2403 WP_003107624.1 ATP-dependent RecD-like DNA helicase Machinery gene
  N2A93_RS08760 (N2A93_08760) - 1730895..1731350 (+) 456 WP_003107625.1 hypothetical protein -
  N2A93_RS08765 (N2A93_08765) dinB 1731383..1732477 (-) 1095 WP_003107626.1 DNA polymerase IV -
  N2A93_RS08770 (N2A93_08770) pflB 1732683..1735010 (+) 2328 WP_003103702.1 formate C-acetyltransferase -
  N2A93_RS08775 (N2A93_08775) - 1735069..1735506 (+) 438 WP_003102732.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 800 a.a.        Molecular weight: 89761.82 Da        Isoelectric Point: 4.6025

>NTDB_id=626560 N2A93_RS08755 WP_003107624.1 1728415..1730817(+) (recD/recD2/recDB) [Streptococcus parauberis strain KSP14]
MEYFFSGTVDRIIFENSSNFFKILNLMIEDTDSDFDDFEIIITGTMADIMEGEDYTFWGQLSQHPKYGQQLQLSRYQRAK
PSSSGLIKYFSSDHFKGIGKKTAERIVSLYGDNTIDKILDDPSKLEDINGFSKANREAFVAKLRINYGTEQIIAALVELG
LSNRMAFQIYDQYKEEAVERVRTNPYQLVEDIQGIGFKMSDKLAQEIGIADSAPERFRAALLHSLLEQSISQGDTYIEAR
DLLAYAIDLLEDSRQIECDPAQVAQELSHLISDEKVYNAGTKIFDASLFTAEEGIKNQLQRLLDTPFEKQISQDKIEKEV
QAIEKEFAISYDQVQKDAIYQALTSKVFILTGGPGTGKTTVIRGILEAYARINDIDLNKKDLPIVLAAPTGRAARRMNEL
TGLPSATIHRHLGLNGDNDYQAMEDYLDCDLLVVDEFSMVDTWLANQLLGAISSNTQIIIVGDSDQLPSVGPGQVLADLL
KITSLPQIALRKIFRQSADSTIVDLANQMRQGILPVDFRDKKADRSYFDAMPQHVPTMVTKIVASAVKSGIPADEIQILA
PMYKGQAGINNLNQLMQELLNPLDNGTEFVFNEIHFRKGDKVLHLVNDAQLNVFNGDIGYITDLIPAKYTESKQDEIMMD
FDGSEVTYPRNEWLKITLAYAMSIHKSQGSEFQVVILPITRQSGRMLQRNLIYTAVTRSKSKLILLGEHSAFDYAIKNEG
DKRKTFLVQRFDQDLTTESSDQLAKIDTVENSSDSLGQAQNTIAKPLESEEPTILTTANMLSIDPLIGLTDADFKKFFKK

Nucleotide


Download         Length: 2403 bp        

>NTDB_id=626560 N2A93_RS08755 WP_003107624.1 1728415..1730817(+) (recD/recD2/recDB) [Streptococcus parauberis strain KSP14]
ATGGAATACTTTTTTTCCGGGACTGTTGATCGCATCATTTTCGAAAATAGCAGTAACTTTTTTAAAATCTTAAACCTAAT
GATTGAAGATACCGACAGTGACTTTGATGACTTTGAAATCATCATTACTGGAACCATGGCTGACATCATGGAGGGAGAAG
ATTATACCTTCTGGGGGCAATTAAGCCAACATCCCAAATATGGCCAACAACTGCAACTCAGCCGTTACCAGCGAGCTAAA
CCAAGTTCATCTGGTCTAATCAAGTACTTTTCCAGTGATCATTTTAAAGGAATTGGGAAAAAGACCGCCGAGAGAATTGT
CTCTTTATACGGTGACAATACGATTGATAAAATTCTTGACGACCCTAGCAAGTTAGAGGATATCAACGGCTTTTCAAAAG
CTAACCGAGAAGCCTTTGTAGCTAAGCTAAGAATCAATTACGGAACAGAACAAATCATCGCTGCACTGGTAGAATTAGGA
TTGTCTAATCGGATGGCCTTCCAAATATACGATCAATATAAAGAAGAAGCTGTCGAACGGGTTAGGACTAATCCCTATCA
ACTCGTAGAAGACATCCAAGGCATCGGCTTTAAAATGTCTGATAAATTAGCTCAGGAAATCGGTATAGCTGATTCTGCAC
CTGAACGGTTTCGGGCTGCTCTATTACATAGTTTATTGGAACAATCAATTAGCCAAGGTGATACCTACATCGAGGCGCGT
GATTTATTAGCCTATGCTATTGATTTGTTAGAAGACTCTCGACAAATTGAATGTGATCCTGCGCAAGTTGCCCAAGAATT
AAGTCATTTAATTTCTGATGAAAAAGTTTATAATGCAGGTACTAAAATATTTGATGCCTCTCTATTTACAGCTGAAGAGG
GAATTAAAAATCAACTTCAACGTTTACTAGATACCCCATTTGAGAAACAAATCAGTCAAGATAAGATTGAAAAAGAAGTA
CAAGCAATTGAGAAGGAATTTGCCATTAGCTATGATCAGGTCCAAAAGGACGCAATTTATCAAGCATTGACCAGCAAGGT
CTTTATCTTAACTGGTGGTCCAGGTACTGGTAAAACAACCGTTATCAGAGGAATTCTAGAAGCTTATGCTCGGATTAATG
ACATTGATTTAAATAAAAAAGATTTACCGATTGTTCTAGCAGCGCCTACTGGTCGAGCTGCTCGTCGGATGAATGAATTA
ACTGGCCTACCAAGTGCCACTATTCATCGTCATTTAGGCTTAAATGGTGACAATGATTACCAAGCCATGGAAGACTACTT
AGACTGTGATTTATTAGTTGTTGATGAATTTTCTATGGTTGATACTTGGTTAGCCAATCAATTATTAGGTGCCATATCAT
CGAATACCCAAATAATCATTGTTGGTGACAGTGACCAGTTACCGTCTGTAGGACCAGGTCAGGTTCTAGCAGATCTTTTG
AAAATTACCAGTCTACCACAAATCGCCCTTCGTAAAATTTTCCGTCAATCAGCTGATTCAACCATCGTTGATTTGGCAAA
TCAAATGCGTCAAGGCATATTGCCAGTAGATTTTCGAGATAAAAAAGCAGACCGTTCTTACTTTGATGCCATGCCTCAAC
ATGTTCCAACTATGGTCACAAAAATTGTCGCTTCTGCTGTTAAAAGTGGTATCCCAGCTGATGAAATTCAGATTCTTGCT
CCCATGTATAAAGGACAAGCAGGCATCAACAATCTCAATCAGCTTATGCAAGAGCTTCTCAATCCATTAGATAATGGTAC
AGAATTTGTCTTTAATGAGATACATTTTCGAAAGGGAGATAAAGTCTTACACTTAGTTAATGATGCCCAATTGAATGTCT
TTAATGGTGATATTGGTTACATTACAGATTTAATTCCAGCCAAGTACACCGAGTCCAAACAAGATGAAATTATGATGGAT
TTTGATGGGTCAGAAGTAACTTATCCTCGCAATGAATGGTTAAAAATCACCTTGGCCTATGCCATGAGTATTCATAAGTC
GCAGGGGAGTGAGTTCCAAGTGGTTATTCTTCCAATCACCCGCCAGAGTGGGCGCATGCTTCAACGGAATCTGATTTATA
CAGCTGTCACAAGGTCAAAGAGTAAATTAATTTTACTGGGTGAGCACTCAGCTTTTGATTATGCAATCAAAAATGAGGGT
GATAAACGAAAAACTTTCCTAGTGCAACGATTTGACCAAGACCTGACAACAGAATCAAGCGACCAATTAGCAAAAATTGA
TACAGTTGAAAACAGTTCGGACAGTCTAGGACAAGCCCAAAATACTATTGCAAAGCCCTTAGAATCTGAAGAGCCAACGA
TTTTAACGACAGCAAATATGTTATCTATTGATCCACTGATTGGCTTGACTGATGCTGATTTTAAAAAATTTTTTAAAAAA
TAG

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-641)

Helix-hairpin-helix containing domain (HHH_RecD2)

(146-236)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-706)

AAA domain (AAA_30)

(331-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

42.933

93.75

0.402