Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   LJN47_RS01910 Genome accession   NZ_CP086760
Coordinates   402860..403144 (-) Length   94 a.a.
NCBI ID   WP_000736106.1    Uniprot ID   T0F3N0
Organism   Helicobacter pylori strain 3192     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 397860..408144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJN47_RS01880 (LJN47_01880) - 398110..398961 (+) 852 Protein_370 hypothetical protein -
  LJN47_RS01885 (LJN47_01885) - 399041..399700 (+) 660 WP_412030814.1 IS607-like element IS607 family transposase -
  LJN47_RS01890 (LJN47_01890) - 399670..400929 (+) 1260 WP_229929360.1 RNA-guided endonuclease InsQ/TnpB family protein -
  LJN47_RS01895 (LJN47_01895) - 400975..402339 (-) 1365 Protein_373 transporter -
  LJN47_RS01900 (LJN47_01900) - 402339..402575 (-) 237 WP_096524574.1 hypothetical protein -
  LJN47_RS01905 (LJN47_01905) comB3 402586..402849 (-) 264 WP_006564000.1 hypothetical protein Machinery gene
  LJN47_RS01910 (LJN47_01910) comB2 402860..403144 (-) 285 WP_000736106.1 TrbC/VirB2 family protein Machinery gene
  LJN47_RS01915 (LJN47_01915) - 403141..403620 (-) 480 WP_229929964.1 hypothetical protein -
  LJN47_RS01920 (LJN47_01920) - 403724..404512 (-) 789 WP_229929965.1 integrase -
  LJN47_RS01925 (LJN47_01925) - 404563..405321 (-) 759 Protein_379 hypothetical protein -
  LJN47_RS01930 (LJN47_01930) - 405286..406527 (+) 1242 WP_229929967.1 Mrp/NBP35 family ATP-binding protein -
  LJN47_RS01935 (LJN47_01935) - 406540..407559 (-) 1020 WP_229930185.1 glycosyltransferase family 8 protein -
  LJN47_RS01940 (LJN47_01940) - 407586..407699 (-) 114 WP_001156389.1 glycosyltransferase family 8 protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10752.11 Da        Isoelectric Point: 11.1589

>NTDB_id=626284 LJN47_RS01910 WP_000736106.1 402860..403144(-) (comB2) [Helicobacter pylori strain 3192]
MKKLRHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=626284 LJN47_RS01910 WP_000736106.1 402860..403144(-) (comB2) [Helicobacter pylori strain 3192]
ATGAAAAAATTAAGGCATTTTAGAAAGCTTATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGTCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGCGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T0F3N0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.778

95.745

0.553