Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   LJN47_RS00835 Genome accession   NZ_CP086760
Coordinates   177378..177659 (+) Length   93 a.a.
NCBI ID   WP_033756641.1    Uniprot ID   A0A0S1XLV9
Organism   Helicobacter pylori strain 3192     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 172378..182659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJN47_RS00815 (LJN47_00815) groES 172957..173313 (-) 357 WP_015643372.1 co-chaperone GroES -
  LJN47_RS00820 (LJN47_00820) dnaG 173589..175268 (+) 1680 WP_229929862.1 DNA primase -
  LJN47_RS00825 (LJN47_00825) - 175265..176317 (+) 1053 WP_229929863.1 MnmA/TRMU family protein -
  LJN47_RS00830 (LJN47_00830) - 176406..177233 (+) 828 WP_229929864.1 DUF5718 family protein -
  LJN47_RS00835 (LJN47_00835) comB2 177378..177659 (+) 282 WP_033756641.1 TrbC/VirB2 family protein Machinery gene
  LJN47_RS00840 (LJN47_00840) comB3 177659..177922 (+) 264 WP_000584956.1 hypothetical protein Machinery gene
  LJN47_RS00845 (LJN47_00845) comB4 177924..180287 (+) 2364 WP_229929865.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  LJN47_RS00855 (LJN47_00855) - 180589..181929 (+) 1341 WP_220946708.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10569.79 Da        Isoelectric Point: 8.0163

>NTDB_id=626274 LJN47_RS00835 WP_033756641.1 177378..177659(+) (comB2) [Helicobacter pylori strain 3192]
MSDHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=626274 LJN47_RS00835 WP_033756641.1 177378..177659(+) (comB2) [Helicobacter pylori strain 3192]
ATGTCCGATCATTTTTTAAAAATCGTTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(8-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0S1XLV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989