Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   HK939_RS02110 Genome accession   NZ_CP086657
Coordinates   419978..420493 (+) Length   171 a.a.
NCBI ID   WP_002806270.1    Uniprot ID   -
Organism   Campylobacter coli strain P4581     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 414978..425493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK939_RS02085 (HK939_002075) - 415435..415773 (+) 339 WP_002777761.1 hypothetical protein -
  HK939_RS02090 (HK939_002080) - 415782..416507 (+) 726 WP_002780542.1 phosphatidate cytidylyltransferase -
  HK939_RS02095 (HK939_002085) dxr 416504..417574 (+) 1071 WP_052776448.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  HK939_RS02100 (HK939_002090) - 417576..418970 (+) 1395 WP_229133648.1 M99 family carboxypeptidase catalytic domain-containing protein -
  HK939_RS02105 (HK939_002095) tsaD 418967..419974 (+) 1008 WP_002806269.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  HK939_RS02110 (HK939_002100) ctsG 419978..420493 (+) 516 WP_002806270.1 type II secretion system protein Machinery gene
  HK939_RS02115 (HK939_002105) - 420493..421744 (+) 1252 Protein_408 DUF2920 family protein -
  HK939_RS02120 (HK939_002110) - 421755..423578 (+) 1824 WP_229133649.1 motility associated factor glycosyltransferase family protein -
  HK939_RS02125 (HK939_002115) - 423575..425389 (+) 1815 Protein_410 6-hydroxymethylpterin diphosphokinase MptE-like protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18865.84 Da        Isoelectric Point: 9.0544

>NTDB_id=625984 HK939_RS02110 WP_002806270.1 419978..420493(+) (ctsG) [Campylobacter coli strain P4581]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDEKECLKLVFINKADFILMGISSNEASKNAIINIANNPKQEFQNLDFTSNSKNKACVALSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=625984 HK939_RS02110 WP_002806270.1 419978..420493(+) (ctsG) [Campylobacter coli strain P4581]
GTGAAAAGAGCTTTTACCATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGAGAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGCAAAAATGCCATAATTAATATAGCCAATAACCCCAAACAAGAAT
TTCAAAACTTAGATTTTACAAGCAATTCAAAAAATAAAGCTTGCGTGGCACTAAGTAAAAATGAGAATTTTAAAAATTTA
GCCAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

85.38

100

0.854