Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   HK939_RS02065 Genome accession   NZ_CP086657
Coordinates   411394..412362 (-) Length   322 a.a.
NCBI ID   WP_192801245.1    Uniprot ID   -
Organism   Campylobacter coli strain P4581     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 406394..417362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK939_RS02045 (HK939_002035) - 407909..408541 (-) 633 WP_002777778.1 membrane protein -
  HK939_RS02050 (HK939_002040) - 408707..409696 (-) 990 WP_002777774.1 siderophore ABC transporter substrate-binding protein -
  HK939_RS02055 (HK939_002045) - 409711..410466 (-) 756 WP_002780521.1 ABC transporter ATP-binding protein -
  HK939_RS02060 (HK939_002050) - 410463..411401 (-) 939 WP_229133647.1 iron chelate uptake ABC transporter family permease subunit -
  HK939_RS02065 (HK939_002055) ceuB 411394..412362 (-) 969 WP_192801245.1 ABC transporter permease Machinery gene
  HK939_RS02070 (HK939_002060) - 412495..413388 (-) 894 WP_225847699.1 phospholipase A -
  HK939_RS02075 (HK939_002065) - 413487..414062 (-) 576 WP_002780540.1 molybdenum cofactor guanylyltransferase -
  HK939_RS02080 (HK939_002070) - 414125..415432 (+) 1308 WP_002795405.1 NFACT family protein -
  HK939_RS02085 (HK939_002075) - 415435..415773 (+) 339 WP_002777761.1 hypothetical protein -
  HK939_RS02090 (HK939_002080) - 415782..416507 (+) 726 WP_002780542.1 phosphatidate cytidylyltransferase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35505.36 Da        Isoelectric Point: 9.5069

>NTDB_id=625983 HK939_RS02065 WP_192801245.1 411394..412362(-) (ceuB) [Campylobacter coli strain P4581]
MLFKHLFSLNILLILLVVFGIISLFIGVIRINLDDIFSLSTTQLEIILLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFAQALIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIINAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIAGMGEDLALNLGVSYNTILFLGLIIVSIITSVV
IVSIGVIPFLGLIIPNLVAIYRGDNLKKNLIYIALCGALFLLICDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKT
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=625983 HK939_RS02065 WP_192801245.1 411394..412362(-) (ceuB) [Campylobacter coli strain P4581]
TTGCTTTTTAAACACTTGTTTAGTTTAAATATTCTTTTAATTTTACTTGTTGTTTTTGGAATAATAAGCTTATTTATAGG
GGTTATTCGTATCAATTTAGACGATATTTTTTCACTCAGCACTACCCAGCTCGAAATCATTTTACTTACAAGAATTCCAA
GGCTTATTGCAATTTTACTTACAGGTATGAGTCTTAGTATATGCGGACTCATCATGCAACAACTCACGCAAAATAAATTT
GTTTCTCCAACCACTGCAGGGACTATGGATTGTGCTAAATTTGGCATTTTGATTTCTTTAATATTTTTTACAGGAGCTTC
TTTTTTTGCTCAAGCTCTCATCGCATCTATTTTTGCTCTTTTAGGTTCTTTTATATTTATCCAAATTCTAAGAAAAATTA
AACTTAAAGATGTGATTTTTGTGCCTTTGATAGGCTTAATGTTTGGTGGGATTATAAATGCTATAACCACTTTTTTTGCT
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTTTATATTTCTTTACCGCTTTTTATACTTGCTTATTTTCTAGCCCATAAAATCACTATAGCAGGTATGGGAGAAGATC
TTGCTTTAAATCTTGGAGTTTCTTATAATACAATCTTATTTTTAGGCTTAATAATAGTTTCTATTATCACTAGCGTAGTG
ATTGTAAGCATTGGAGTTATACCTTTTTTAGGTCTTATCATCCCTAATCTTGTTGCCATTTATCGCGGGGATAATCTTAA
GAAAAATCTTATCTATATAGCATTATGCGGGGCTTTGTTTTTACTTATTTGCGATATTATCTCAAGGCTTGTGATTTTTC
CTTTTGAAATGCCTTTGAGTATAACCACAGGTGTTTTGGGCTCTTTAATTTTTATTTTTCTTTTACTCAAAAGGAAAACT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

88.82

100

0.888