Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   NYR17_RS03580 Genome accession   NZ_CP103950
Coordinates   744596..745249 (+) Length   217 a.a.
NCBI ID   WP_302506452.1    Uniprot ID   -
Organism   Riemerella columbina strain TH22     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 739596..750249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR17_RS03560 (NYR17_03560) - 739920..743063 (+) 3144 WP_302506982.1 exodeoxyribonuclease V subunit beta -
  NYR17_RS03565 (NYR17_03565) - 743121..743786 (+) 666 WP_302506450.1 HD domain-containing protein -
  NYR17_RS03570 (NYR17_03570) - 743813..744406 (+) 594 WP_302506451.1 hypothetical protein -
  NYR17_RS03580 (NYR17_03580) comF 744596..745249 (+) 654 WP_302506452.1 ComF family protein Machinery gene
  NYR17_RS03585 (NYR17_03585) gldD 745321..745881 (+) 561 WP_302506454.1 gliding motility lipoprotein GldD -
  NYR17_RS03590 (NYR17_03590) - 745925..746845 (+) 921 WP_302506456.1 PfkB family carbohydrate kinase -
  NYR17_RS03595 (NYR17_03595) - 746932..748299 (+) 1368 WP_302506457.1 peptidylprolyl isomerase -
  NYR17_RS03600 (NYR17_03600) - 748402..749451 (+) 1050 WP_302506458.1 glucokinase -
  NYR17_RS03605 (NYR17_03605) - 749533..749820 (-) 288 WP_302506459.1 chaperone modulator CbpM -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25262.28 Da        Isoelectric Point: 8.3394

>NTDB_id=625983 NYR17_RS03580 WP_302506452.1 744596..745249(+) (comF) [Riemerella columbina strain TH22]
MRRILDVIFPNRCIGCQRMIEPEAVICWACTFQVPFTHDTFGDRNLLYERCAEQIPLHNAYALMYYQKIGLSRKLIHQLK
YHGMSRLGRWFAYEIAERMEPKDIEAIVTIPLHPKKQRQRGYNQLHLLADTLSELWQVPHLPQALKRNFYSKPQAKKDQT
HRKALTNLFSLDQPPEVQHLLVIDDVYTTGSTMKNAAEALLNGTDYQLSILVLAVDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=625983 NYR17_RS03580 WP_302506452.1 744596..745249(+) (comF) [Riemerella columbina strain TH22]
ATGCGTAGAATTTTAGATGTCATATTCCCTAACCGATGTATAGGCTGCCAGCGGATGATAGAGCCAGAGGCGGTCATATG
CTGGGCGTGTACATTTCAAGTCCCATTTACTCACGATACTTTTGGTGACCGTAACCTCCTCTACGAAAGGTGTGCGGAAC
AAATACCGCTTCATAATGCCTATGCATTGATGTATTATCAAAAAATAGGGCTTTCTCGGAAATTGATACACCAACTGAAA
TACCACGGTATGTCGCGACTGGGGCGTTGGTTTGCTTATGAAATAGCCGAGCGTATGGAACCCAAAGATATTGAGGCGAT
TGTTACCATTCCACTACACCCTAAAAAACAAAGGCAAAGAGGCTATAATCAGCTGCATCTGTTGGCGGATACCCTTTCGG
AATTATGGCAAGTGCCCCACCTGCCACAGGCTTTGAAGCGCAATTTTTACTCTAAGCCACAAGCCAAAAAAGACCAAACC
CACCGCAAAGCCCTCACCAATTTGTTTTCTTTGGATCAGCCGCCAGAAGTCCAGCATTTGCTCGTTATTGATGATGTTTA
TACCACAGGCTCCACAATGAAAAATGCCGCTGAGGCACTTTTAAACGGCACCGATTATCAGCTGAGCATTTTGGTTTTGG
CAGTAGATGAATAA

Domains

Predicted by InterProScan.

Double zinc ribbon domain (DZR_2)

(4-38)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

47.222

99.539

0.47