Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LN051_RS05345 Genome accession   NZ_CP086654
Coordinates   1105493..1107868 (+) Length   791 a.a.
NCBI ID   WP_229293522.1    Uniprot ID   -
Organism   Staphylococcus ratti strain CCM 9025     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1100493..1112868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LN051_RS05320 (LN051_05320) - 1101057..1101221 (+) 165 WP_229293518.1 hypothetical protein -
  LN051_RS05325 (LN051_05325) - 1101280..1102296 (-) 1017 WP_229293519.1 LLM class flavin-dependent oxidoreductase -
  LN051_RS05330 (LN051_05330) - 1102521..1103666 (+) 1146 WP_229293623.1 cysteine desulfurase family protein -
  LN051_RS05335 (LN051_05335) mnmA 1103663..1104775 (+) 1113 WP_229293520.1 tRNA 2-thiouridine(34) synthase MnmA -
  LN051_RS05340 (LN051_05340) - 1104816..1105490 (+) 675 WP_229293521.1 tetratricopeptide repeat protein -
  LN051_RS05345 (LN051_05345) recD2 1105493..1107868 (+) 2376 WP_229293522.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LN051_RS05350 (LN051_05350) alaS 1108103..1110733 (+) 2631 WP_229293523.1 alanine--tRNA ligase -
  LN051_RS05355 (LN051_05355) - 1110796..1111068 (+) 273 WP_229293524.1 IreB family regulatory phosphoprotein -
  LN051_RS05360 (LN051_05360) ruvX 1111061..1111489 (+) 429 WP_229293525.1 Holliday junction resolvase RuvX -
  LN051_RS05365 (LN051_05365) - 1111504..1111824 (+) 321 WP_229293526.1 DUF1292 domain-containing protein -
  LN051_RS05370 (LN051_05370) - 1112141..1112785 (+) 645 WP_229293527.1 O-methyltransferase -

Sequence

Protein


Download         Length: 791 a.a.        Molecular weight: 89509.93 Da        Isoelectric Point: 4.6621

>NTDB_id=625960 LN051_RS05345 WP_229293522.1 1105493..1107868(+) (recD2) [Staphylococcus ratti strain CCM 9025]
MENPTLFEQSYIKGNIEVILFQNSDNYYTVLKVEVEDTNEDFDTIATVVGYFPNIVESETYTFKGQIAEHPKYGKQLKAE
TFQKELPQTRDAVIQYLSSDLFKGVGKKTAESIVDTLGEKAIQVILKDTSVLEKVPKLSKTKQQQIAEQVIQNQESEQIM
IRLNELGFGAKLAMDIYKFYKGETLNIIEQNPYQLVYDIRGVGFHKADQLANLIGISENHPNRLKAGIQYVVEETCIKQG
HTYLPKEALLTEAYTLLTKQIESDIETALIEDVLTQLIEEKRLIEDEGQVAIPSLYYSELKSTQNVYKVMHNQITLDTFD
QSEVQLHIGEIEEKNGVAYATAQKEALESAMKHKMMILTGGPGTGKTTVIKGIVHLYATLHGISLDYNDYTDEDYPIVLA
APTGRASKRLHDATGLEAMTIHRLIGWNQETQPEDILENEITAKLIIIDEMSMVDTWLFHQFMAAVPNDAQVVLVGDEDQ
LPSVGPGQVFKDLIASKVLPRINLTEVYRQQDGSSIIALAHRMKSGQTVDITERFHDRSFIPCHVDQIPEVVQKVVTNAV
QKGYDMSDIQVLAPMYRGNAGIQRLNKILQNILNPLAEEEQREIQFGDVMFRKGDKVLQLVNRPNDNIFNGDIGVIVGIF
WAKENALNKDVVVVDYEGNEITYLKSDLTELTHAYCTSIHKAQGSEFPIVIMPIVKQYFRMLQKPILYTGLTRAKQSLVF
LGDAEAFNIGLKTEGQVRFTRQQSFLEQYFQNHQEDEAAPEVLTEATMFQIDPMINMNHVSPYDFLEIDNA

Nucleotide


Download         Length: 2376 bp        

>NTDB_id=625960 LN051_RS05345 WP_229293522.1 1105493..1107868(+) (recD2) [Staphylococcus ratti strain CCM 9025]
GTGGAGAACCCAACACTTTTTGAACAGTCCTATATCAAAGGCAATATTGAAGTCATCTTGTTTCAAAACAGTGATAATTA
TTACACTGTACTTAAAGTTGAAGTTGAAGACACCAATGAAGACTTTGATACTATTGCAACAGTAGTTGGGTATTTCCCTA
ATATAGTAGAAAGTGAGACGTATACATTTAAAGGTCAAATTGCTGAACATCCAAAGTATGGAAAGCAATTAAAAGCTGAA
ACGTTTCAAAAAGAACTTCCACAAACGAGAGATGCAGTAATTCAATATTTGTCGAGCGACTTATTTAAAGGCGTCGGTAA
GAAAACAGCTGAATCAATCGTAGACACTTTGGGCGAAAAAGCAATACAAGTGATATTAAAAGACACATCTGTGCTAGAAA
AAGTGCCCAAACTTTCTAAAACTAAGCAACAACAAATTGCTGAACAAGTCATTCAAAATCAAGAAAGCGAACAAATTATG
ATTCGCTTAAATGAACTTGGATTTGGGGCAAAATTGGCGATGGATATTTACAAGTTTTATAAGGGAGAAACTTTAAATAT
TATTGAACAAAATCCATATCAATTAGTTTATGATATTAGAGGTGTCGGTTTTCATAAAGCGGACCAATTAGCAAATTTAA
TAGGTATATCGGAAAATCACCCAAACCGATTAAAAGCAGGGATTCAATATGTTGTAGAAGAAACTTGCATCAAACAAGGT
CATACGTATTTACCGAAAGAGGCTTTACTTACCGAAGCGTACACGCTTTTAACAAAACAAATTGAATCTGATATTGAAAC
GGCGTTAATCGAAGACGTCTTAACGCAACTTATTGAAGAAAAGCGCTTAATCGAAGACGAGGGCCAAGTTGCCATTCCGA
GTTTATATTATTCGGAACTGAAAAGCACACAAAATGTGTATAAAGTCATGCATAATCAAATTACATTAGACACGTTTGAT
CAATCAGAAGTACAATTGCATATTGGTGAAATTGAAGAAAAAAATGGCGTTGCCTATGCAACCGCTCAAAAAGAAGCACT
TGAATCTGCCATGAAACACAAAATGATGATATTGACCGGAGGACCAGGAACGGGTAAAACTACGGTAATTAAAGGCATTG
TGCATCTTTATGCGACATTGCATGGGATTTCATTAGATTATAATGATTATACTGATGAAGATTATCCCATTGTACTCGCA
GCACCAACGGGACGTGCATCTAAACGGCTTCATGATGCCACCGGCTTAGAAGCGATGACCATTCATCGGCTTATCGGTTG
GAACCAAGAGACGCAACCTGAGGATATTTTGGAAAATGAAATTACAGCCAAACTTATTATTATCGATGAGATGTCGATGG
TAGATACTTGGTTGTTTCATCAATTTATGGCTGCTGTACCAAATGATGCACAAGTCGTATTAGTTGGCGATGAAGATCAA
TTGCCATCGGTAGGTCCTGGTCAAGTTTTTAAAGATTTGATTGCATCTAAAGTGCTTCCGCGTATTAATTTGACAGAAGT
TTATCGTCAACAAGACGGCTCTAGTATTATCGCGCTAGCCCACCGCATGAAATCTGGCCAAACTGTAGACATTACAGAAC
GTTTTCATGACCGTTCTTTTATCCCATGCCATGTTGATCAAATTCCAGAAGTTGTTCAGAAGGTTGTCACAAATGCCGTT
CAAAAAGGATATGATATGTCTGATATCCAAGTGCTTGCGCCAATGTATCGTGGTAATGCAGGAATTCAGCGGCTTAATAA
AATACTTCAAAATATCTTAAATCCTTTAGCCGAAGAGGAACAAAGAGAAATTCAATTTGGCGATGTGATGTTTCGAAAAG
GAGACAAAGTCCTACAACTTGTCAATCGTCCGAATGACAATATTTTTAATGGCGATATTGGTGTGATTGTAGGCATTTTT
TGGGCTAAAGAAAATGCGCTTAATAAAGATGTCGTCGTTGTTGACTATGAAGGAAATGAAATCACATATTTAAAATCAGA
TTTAACGGAACTTACGCATGCTTACTGTACGTCGATTCATAAAGCACAAGGGTCTGAATTTCCAATTGTTATTATGCCGA
TTGTGAAACAGTATTTTCGAATGCTTCAAAAACCTATCCTTTATACTGGATTGACACGGGCGAAGCAATCATTGGTATTT
CTCGGAGATGCCGAAGCTTTTAACATTGGTTTAAAAACGGAAGGGCAAGTGAGATTCACGCGTCAACAAAGCTTTTTAGA
ACAGTATTTCCAAAATCATCAAGAAGACGAAGCTGCGCCGGAAGTACTAACCGAAGCAACAATGTTCCAAATCGATCCAA
TGATCAATATGAATCACGTTAGCCCGTATGATTTTTTAGAAATTGACAATGCCTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-720)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

AAA domain (AAA_30)

(339-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.315

100

0.504