Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   NYR19_RS11270 Genome accession   NZ_CP103874
Coordinates   2388641..2389147 (+) Length   168 a.a.
NCBI ID   WP_039083128.1    Uniprot ID   A0A0A2XVI8
Organism   Gallibacterium anatis strain TH22     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2383641..2394147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR19_RS11245 (NYR19_11255) - 2384724..2385488 (+) 765 WP_021460926.1 class I SAM-dependent methyltransferase -
  NYR19_RS11250 (NYR19_11260) - 2385454..2386152 (-) 699 WP_285097721.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -
  NYR19_RS11255 (NYR19_11265) - 2386297..2386842 (+) 546 WP_302508310.1 DJ-1 family glyoxalase III -
  NYR19_RS11260 (NYR19_11270) - 2386906..2387850 (+) 945 WP_039088805.1 NADP-dependent oxidoreductase -
  NYR19_RS11265 (NYR19_11275) - 2387854..2388459 (+) 606 WP_302508313.1 sugar O-acetyltransferase -
  NYR19_RS11270 (NYR19_11280) luxS 2388641..2389147 (+) 507 WP_039083128.1 S-ribosylhomocysteine lyase Regulator
  NYR19_RS11275 (NYR19_11285) purT 2389214..2390395 (+) 1182 WP_302508314.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  NYR19_RS11280 (NYR19_11290) - 2390451..2391149 (-) 699 WP_039141964.1 fumarylacetoacetate hydrolase family protein -
  NYR19_RS11285 (NYR19_11295) rbsD 2391344..2391763 (+) 420 WP_013746307.1 D-ribose pyranase -
  NYR19_RS11290 (NYR19_11300) rbsA 2391776..2393263 (+) 1488 WP_210641731.1 ribose ABC transporter ATP-binding protein RbsA -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18714.41 Da        Isoelectric Point: 6.2181

>NTDB_id=625960 NYR19_RS11270 WP_039083128.1 2388641..2389147(+) (luxS) [Gallibacterium anatis strain TH22]
MPLLDSFKVDHVKMNAPAVRVAKTMQTPKGDKITVFDLRFCKPNQDNISPKGIHTLEHLFAGFMRDHLNSDSVEIIDISP
MGCRTGFYMSLIGTPAEQQVAAAWEKAMQDVLSVKSEKEIPELNQYQCGTYTEHSLADAQAAAKKVLAQGIGINHNQDLL
LDDRFLNQ

Nucleotide


Download         Length: 507 bp        

>NTDB_id=625960 NYR19_RS11270 WP_039083128.1 2388641..2389147(+) (luxS) [Gallibacterium anatis strain TH22]
ATGCCATTATTAGACAGTTTTAAGGTTGACCACGTTAAAATGAATGCCCCTGCGGTGCGTGTTGCAAAGACAATGCAAAC
GCCTAAAGGCGATAAAATTACAGTTTTTGATCTTCGTTTTTGCAAACCGAATCAAGACAATATCAGTCCGAAAGGTATTC
ACACTTTGGAACATCTTTTCGCCGGTTTTATGCGTGATCATCTCAATAGTGACAGCGTTGAAATTATTGATATTTCACCA
ATGGGTTGCCGCACCGGATTTTATATGAGTTTAATCGGTACGCCTGCGGAACAACAAGTTGCGGCGGCGTGGGAAAAAGC
AATGCAGGATGTATTGTCGGTAAAAAGCGAAAAAGAGATCCCGGAATTAAACCAATACCAATGCGGAACCTACACTGAAC
ATTCATTAGCGGATGCTCAAGCAGCAGCGAAAAAGGTGCTTGCTCAGGGAATCGGCATTAATCACAATCAAGATTTATTA
CTTGATGACCGTTTTTTAAATCAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A2XVI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

71.429

100

0.714