Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   NYR19_RS02170 Genome accession   NZ_CP103874
Coordinates   450863..451150 (+) Length   95 a.a.
NCBI ID   WP_302508692.1    Uniprot ID   -
Organism   Gallibacterium anatis strain TH22     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445863..456150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR19_RS02140 (NYR19_02140) - 446626..447597 (+) 972 WP_285099437.1 sigma 54-interacting transcriptional regulator -
  NYR19_RS02145 (NYR19_02145) sspA 447738..448376 (+) 639 WP_302508690.1 stringent starvation protein SspA -
  NYR19_RS02150 (NYR19_02150) - 448386..448847 (+) 462 WP_039085375.1 ClpXP protease specificity-enhancing factor -
  NYR19_RS02155 (NYR19_02155) - 448991..449524 (+) 534 WP_039149627.1 Tfp pilus assembly protein FimT/FimU -
  NYR19_RS02160 (NYR19_02160) - 449514..450236 (+) 723 WP_302508691.1 type II secretion system protein J -
  NYR19_RS02165 (NYR19_02165) - 450220..450873 (+) 654 WP_210640424.1 DUF2572 family protein -
  NYR19_RS02170 (NYR19_02170) comQ 450863..451150 (+) 288 WP_302508692.1 DUF5374 domain-containing protein Machinery gene
  NYR19_RS02175 (NYR19_02175) glpE 451210..451536 (+) 327 WP_039084270.1 thiosulfate sulfurtransferase GlpE -
  NYR19_RS02180 (NYR19_02180) - 451687..452208 (+) 522 WP_302508693.1 NADPH-dependent FMN reductase -
  NYR19_RS02185 (NYR19_02185) - 452205..453110 (+) 906 WP_302508694.1 pirin family protein -
  NYR19_RS02190 (NYR19_02190) ppx 453194..454678 (-) 1485 WP_302508695.1 exopolyphosphatase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10910.75 Da        Isoelectric Point: 10.1102

>NTDB_id=625923 NYR19_RS02170 WP_302508692.1 450863..451150(+) (comQ) [Gallibacterium anatis strain TH22]
MQRNLQGSAIINVLVTLMFLSLLLLSTQHWIKRQQQQTVILWQATQALQIAENQWNLRVIGENFEKNVQQNGIVFNIQCS
GNQVVVHYPLGKIVL

Nucleotide


Download         Length: 288 bp        

>NTDB_id=625923 NYR19_RS02170 WP_302508692.1 450863..451150(+) (comQ) [Gallibacterium anatis strain TH22]
ATGCAACGTAATCTGCAAGGCAGTGCGATTATCAATGTCTTGGTGACGCTGATGTTTTTGTCACTGTTATTACTGTCGAC
ACAGCATTGGATTAAGCGGCAACAGCAGCAAACAGTAATTTTGTGGCAGGCGACACAAGCTTTGCAAATTGCTGAAAATC
AATGGAATCTAAGAGTCATCGGTGAAAATTTTGAAAAAAACGTACAACAAAACGGCATTGTTTTTAATATTCAATGCAGC
GGCAATCAGGTAGTGGTGCATTATCCGCTGGGAAAAATTGTGTTGTAA

Domains

Predicted by InterProScan.

Family of unknown function (DUF5374) (DUF5374)

(57-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

36.842

100

0.368