Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   VIBNI_RS16015 Genome accession   NC_022528
Coordinates   3542261..3542971 (+) Length   236 a.a.
NCBI ID   WP_022551825.1    Uniprot ID   -
Organism   Vibrio nigripulchritudo     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3537261..3547971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIBNI_RS15995 (VIBNI_A3357) lexA 3537388..3538005 (-) 618 WP_004404532.1 transcriptional repressor LexA -
  VIBNI_RS16000 (VIBNI_A3359) plsB 3538335..3540758 (+) 2424 WP_022551823.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  VIBNI_RS16005 (VIBNI_A3360) - 3540815..3541279 (-) 465 WP_004404522.1 hypothetical protein -
  VIBNI_RS16010 (VIBNI_A3362) bioH 3541420..3542184 (-) 765 WP_022551824.1 pimeloyl-ACP methyl ester esterase BioH -
  VIBNI_RS16015 (VIBNI_A3363) comF 3542261..3542971 (+) 711 WP_022551825.1 ComF family protein Machinery gene
  VIBNI_RS16020 (VIBNI_A3364) nfuA 3543062..3543649 (+) 588 WP_004404517.1 Fe-S biogenesis protein NfuA -
  VIBNI_RS16025 (VIBNI_A3366) - 3543740..3545059 (-) 1320 WP_022551826.1 trypsin-like serine protease -
  VIBNI_RS16030 (VIBNI_A3367) cysQ 3545360..3546178 (-) 819 WP_022551827.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  VIBNI_RS16035 (VIBNI_A3368) nudE 3546190..3546744 (-) 555 WP_022551828.1 ADP compounds hydrolase NudE -
  VIBNI_RS16040 (VIBNI_A3369) - 3546904..3547662 (-) 759 WP_004404510.1 type II secretion system protein N -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27332.81 Da        Isoelectric Point: 8.4392

>NTDB_id=62583 VIBNI_RS16015 WP_022551825.1 3542261..3542971(+) (comF) [Vibrio nigripulchritudo]
MVISNWLKLKLHRYFNLQCPLCGLNIEEPTPETRWCKHCLNSMSDPCRCQCCGLSTLEPVEFCGECLSNPPPWRRLYCVN
DYRPPLSHYIHSLKFQHQFRLAPDLSYLLAQKITEPADVITSVPLHWRRELIRGYNQSDHLARALCQHFNMPERFNPNLF
KRVKYTAPQLGQDKKARHRNLYGAFRLIAPPAAKHVAIVDDVVTTGSTIRQMCNLLLDVGVETIDIYCICRTPEPK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=62583 VIBNI_RS16015 WP_022551825.1 3542261..3542971(+) (comF) [Vibrio nigripulchritudo]
ATGGTGATTTCCAACTGGCTAAAGCTCAAATTACACCGTTATTTTAATCTGCAATGCCCGCTATGTGGTCTGAACATTGA
AGAACCTACACCAGAAACACGATGGTGCAAGCATTGCCTGAACAGCATGAGCGATCCTTGCCGTTGCCAATGCTGCGGGC
TGTCTACTTTGGAACCCGTTGAATTCTGCGGTGAGTGCTTAAGCAACCCGCCTCCCTGGCGCCGTCTGTATTGCGTGAAC
GACTATCGTCCACCGCTTTCGCATTATATCCACAGCCTGAAATTTCAGCATCAGTTTCGTCTAGCCCCTGACCTCAGCTA
CTTACTTGCGCAAAAAATTACAGAGCCTGCCGACGTGATTACTTCTGTCCCGCTTCACTGGCGCAGAGAACTGATACGCG
GCTACAACCAGAGTGACCATCTGGCAAGAGCATTGTGTCAGCATTTCAATATGCCCGAACGATTTAATCCGAATCTGTTC
AAGCGGGTGAAATATACAGCACCTCAACTCGGTCAGGATAAAAAGGCGAGGCATAGAAACCTTTATGGTGCTTTTCGGTT
AATTGCGCCTCCAGCTGCAAAGCACGTAGCAATCGTCGACGATGTGGTGACAACGGGCAGCACTATCCGACAAATGTGTA
ATTTACTGCTTGATGTTGGCGTAGAAACCATCGATATTTACTGCATATGCCGAACCCCTGAGCCGAAATAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(180-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

52.34

99.576

0.521
  comF Vibrio campbellii strain DS40M4

48.133

100

0.492

Multiple sequence alignment