Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NYR13_RS08990 Genome accession   NZ_CP103860
Coordinates   1768945..1769718 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain R3-8     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1763945..1774718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR13_RS08955 (NYR13_08955) - 1764198..1764968 (-) 771 WP_000473705.1 isoprenyl transferase -
  NYR13_RS08960 (NYR13_08960) frr 1765341..1765895 (-) 555 WP_001280006.1 ribosome recycling factor -
  NYR13_RS08965 (NYR13_08965) pyrH 1765914..1766636 (-) 723 WP_000057330.1 UMP kinase -
  NYR13_RS08970 (NYR13_08970) tsf 1766773..1767654 (-) 882 WP_000201387.1 translation elongation factor Ts -
  NYR13_RS08975 (NYR13_08975) - 1767689..1767802 (-) 114 WP_001789890.1 hypothetical protein -
  NYR13_RS08980 (NYR13_08980) rpsB 1767836..1768603 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  NYR13_RS08985 (NYR13_08985) - 1768802..1768894 (-) 93 WP_001790530.1 hypothetical protein -
  NYR13_RS08990 (NYR13_08990) codY 1768945..1769718 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NYR13_RS08995 (NYR13_08995) hslU 1769743..1771146 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  NYR13_RS09000 (NYR13_09000) hslV 1771212..1771757 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  NYR13_RS09005 (NYR13_09005) xerC 1771754..1772650 (-) 897 WP_001015597.1 tyrosine recombinase XerC -
  NYR13_RS09010 (NYR13_09010) trmFO 1773067..1774374 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=625798 NYR13_RS08990 WP_000055337.1 1768945..1769718(-) (codY) [Staphylococcus aureus strain R3-8]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=625798 NYR13_RS08990 WP_000055337.1 1768945..1769718(-) (codY) [Staphylococcus aureus strain R3-8]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428