Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   LK341_RS06930 Genome accession   NZ_CP086570
Coordinates   1439876..1440445 (-) Length   189 a.a.
NCBI ID   WP_031787939.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain RIVM_M020832     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1434876..1445445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK341_RS06890 (LK341_06885) - 1435335..1435943 (-) 609 WP_031787940.1 class I SAM-dependent methyltransferase -
  LK341_RS06895 (LK341_06890) rplL 1436131..1436499 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  LK341_RS06900 (LK341_06895) rplJ 1436543..1437043 (-) 501 WP_001273087.1 50S ribosomal protein L10 -
  LK341_RS06905 (LK341_06900) rplA 1437315..1438007 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  LK341_RS06910 (LK341_06905) rplK 1438215..1438637 (-) 423 WP_250327242.1 50S ribosomal protein L11 -
  LK341_RS06915 (LK341_06910) nusG 1438818..1439366 (-) 549 WP_250327243.1 transcription termination/antitermination protein NusG -
  LK341_RS06920 (LK341_06915) secE 1439379..1439561 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  LK341_RS06925 (LK341_06920) rpmG 1439617..1439760 (-) 144 WP_014373786.1 50S ribosomal protein L33 -
  LK341_RS06930 (LK341_06925) sigH 1439876..1440445 (-) 570 WP_031787939.1 RNA polymerase sigma factor Regulator
  LK341_RS06935 (LK341_06930) - 1440526..1441050 (-) 525 WP_000664733.1 NYN domain-containing protein -
  LK341_RS06940 (LK341_06935) rlmB 1441050..1441796 (-) 747 WP_000390335.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LK341_RS06945 (LK341_06940) - 1441804..1442208 (-) 405 WP_031787938.1 Mini-ribonuclease 3 -
  LK341_RS06950 (LK341_06945) cysS 1442201..1443601 (-) 1401 WP_031787937.1 cysteine--tRNA ligase -
  LK341_RS06955 (LK341_06950) cysE 1443585..1444232 (-) 648 WP_072291959.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23045.10 Da        Isoelectric Point: 9.7629

>NTDB_id=625501 LK341_RS06930 WP_031787939.1 1439876..1440445(-) (sigH) [Staphylococcus argenteus strain RIVM_M020832]
MKRCISVHNNVKKHSNIVDENEFEKLITDLKPLIIRRMKRFGFKYHDLEDLYQEILIKIYRATKTFDFKGEQPFVNYVQC
LITSVKYDYLRKCLASSRRMDSLVNEYKVIYPCALKYHDIERNYLNKLNVRELICQFKYLSAFEKEVMYFICDQYKPREI
AQLMNVKEKTIYNAIQRCKSKIRQHFKMF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=625501 LK341_RS06930 WP_031787939.1 1439876..1440445(-) (sigH) [Staphylococcus argenteus strain RIVM_M020832]
TTGAAAAGATGTATATCAGTGCATAATAATGTTAAAAAACACAGCAATATAGTTGACGAGAATGAATTTGAAAAGTTAAT
AACAGATTTGAAACCATTAATCATTCGACGTATGAAAAGGTTTGGTTTTAAATACCATGATTTGGAAGATTTATATCAAG
AGATACTAATAAAGATATATAGGGCAACTAAAACATTCGATTTTAAAGGTGAGCAACCATTCGTGAATTATGTTCAATGT
TTAATCACTTCAGTTAAATACGATTACCTAAGGAAGTGTTTAGCATCTTCTAGAAGAATGGATAGTTTAGTAAATGAATA
TAAAGTTATATATCCTTGTGCATTAAAGTATCATGACATTGAAAGAAACTATTTAAATAAACTGAATGTCAGAGAGTTGA
TTTGTCAATTTAAATATTTAAGTGCATTTGAAAAAGAAGTAATGTATTTTATATGCGACCAATATAAACCAAGAGAGATT
GCCCAATTGATGAATGTTAAAGAAAAAACTATTTATAATGCAATTCAACGGTGTAAAAGTAAAATAAGACAGCATTTTAA
AATGTTTTAA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

68.617

99.471

0.683
  sigH Staphylococcus aureus MW2

67.553

99.471

0.672