Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   NYS59_RS24570 Genome accession   NZ_CP103789
Coordinates   5270936..5271361 (+) Length   141 a.a.
NCBI ID   WP_023107845.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2718     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5265936..5276361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYS59_RS24555 pilX 5266500..5267087 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  NYS59_RS24560 pilY1 5267099..5270590 (+) 3492 WP_128652211.1 type 4a pilus biogenesis protein PilY1 -
  NYS59_RS24565 pilY2 5270592..5270939 (+) 348 WP_021264112.1 type 4a fimbrial biogenesis protein PilY2 -
  NYS59_RS24570 comF 5270936..5271361 (+) 426 WP_023107845.1 type 4a pilus minor pilin PilE Machinery gene
  NYS59_RS24575 ispH 5271408..5272352 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  NYS59_RS24580 fkpB 5272438..5272878 (-) 441 WP_003094726.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  NYS59_RS24585 lspA 5272871..5273380 (-) 510 WP_003094728.1 signal peptidase II -
  NYS59_RS24590 ileS 5273373..5276204 (-) 2832 WP_003094730.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15309.33 Da        Isoelectric Point: 10.0198

>NTDB_id=625463 NYS59_RS24570 WP_023107845.1 5270936..5271361(+) (comF) [Pseudomonas aeruginosa strain 2718]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVTKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=625463 NYS59_RS24570 WP_023107845.1 5270936..5271361(+) (comF) [Pseudomonas aeruginosa strain 2718]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGCTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGACCAAACTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

41.406

90.78

0.376