Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   NYR91_RS08090 Genome accession   NZ_CP103784
Coordinates   1542495..1542944 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain RO-NN-1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1537495..1547944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR91_RS08050 (NYR91_08050) ctaE 1537515..1538138 (+) 624 WP_014476720.1 cytochrome c oxidase subunit III -
  NYR91_RS08055 (NYR91_08055) ctaF 1538141..1538473 (+) 333 WP_014476721.1 cytochrome c oxidase subunit IVB -
  NYR91_RS08060 (NYR91_08060) ctaG 1538501..1539394 (+) 894 WP_014476722.1 cytochrome c oxidase assembly factor CtaG -
  NYR91_RS08065 (NYR91_08065) ylbA 1539426..1539788 (-) 363 WP_003232238.1 YugN family protein -
  NYR91_RS08070 (NYR91_08070) ylbB 1539928..1540374 (+) 447 WP_014476723.1 CBS domain-containing protein -
  NYR91_RS08075 (NYR91_08075) ylbC 1540458..1541498 (+) 1041 WP_041519272.1 CAP domain-containing protein -
  NYR91_RS08080 (NYR91_08080) ylbD 1541726..1542124 (+) 399 WP_014476725.1 YlbD family protein -
  NYR91_RS08085 (NYR91_08085) ylbE 1542140..1542379 (+) 240 WP_014476726.1 YlbE-like family protein -
  NYR91_RS08090 (NYR91_08090) ylbF 1542495..1542944 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  NYR91_RS08095 (NYR91_08095) ylbG 1542999..1543271 (+) 273 WP_009967171.1 YlbG family protein -
  NYR91_RS08100 (NYR91_08100) rsmD 1543593..1544147 (+) 555 WP_014476728.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  NYR91_RS08105 (NYR91_08105) coaD 1544152..1544637 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  NYR91_RS08110 (NYR91_08110) spoVV 1544647..1545873 (-) 1227 WP_014476729.1 dipicolinic acid transporter SpoVV -
  NYR91_RS08115 (NYR91_08115) ylbK 1546054..1546836 (+) 783 WP_003232221.1 patatin family protein -
  NYR91_RS08120 (NYR91_08120) sepM 1546838..1547863 (+) 1026 WP_014476730.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=625303 NYR91_RS08090 WP_003221370.1 1542495..1542944(+) (ylbF) [Bacillus subtilis strain RO-NN-1]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=625303 NYR91_RS08090 WP_003221370.1 1542495..1542944(+) (ylbF) [Bacillus subtilis strain RO-NN-1]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCTATTCTTGATGAGGT
CAGCGTCGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1