Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   N288_RS17460 Genome accession   NC_022524
Coordinates   3443175..3445541 (-) Length   788 a.a.
NCBI ID   WP_009796200.1    Uniprot ID   U5LGC2
Organism   Bacillus infantis NRRL B-14911     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3438175..3450541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N288_RS17445 (N288_18830) dtd 3439710..3440150 (-) 441 WP_009796203.1 D-aminoacyl-tRNA deacylase -
  N288_RS17450 (N288_18835) - 3440163..3442358 (-) 2196 WP_009796202.1 RelA/SpoT family protein -
  N288_RS17455 (N288_18840) - 3442672..3443184 (-) 513 WP_022544223.1 adenine phosphoribosyltransferase -
  N288_RS17460 (N288_18845) recJ 3443175..3445541 (-) 2367 WP_009796200.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  N288_RS17465 (N288_18850) - 3445651..3445971 (-) 321 WP_009796198.1 lipopolysaccharide assembly LapA domain-containing protein -
  N288_RS17470 (N288_18855) - 3445990..3446850 (-) 861 WP_050767321.1 cation diffusion facilitator family transporter -
  N288_RS17475 (N288_18860) secDF 3447021..3449282 (-) 2262 WP_009796196.1 protein translocase subunit SecDF -
  N288_RS17480 (N288_18865) - 3449548..3449841 (-) 294 WP_009796195.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 87343.76 Da        Isoelectric Point: 4.8892

>NTDB_id=62515 N288_RS17460 WP_009796200.1 3443175..3445541(-) (recJ) [Bacillus infantis NRRL B-14911]
MLKSKTRWIVRQSDKDKADTLISELKISPIVASLLVNRGLDTPESAQDFLYGNNGEFHDPFLLAGMDAAVSRINKAINEN
EPILIYGDYDADGVTSTSVMMITLRSLGANVDFYIPNRFTEGYGPNEGAFRHAAEIGTKLLITVDTGISAVHEASIAKEL
GMDLIITDHHEPGPVLPEALAIIHPKLEGSLYPFRELAGVGVAFKVAHALLGNIPEELLEIAAIGTVADLVSLKGENRLL
VQRGIKKLKVTKRAGLLALFKLANVEQAAVDEETIGFMLAPRLNAAGRLDSADPAVHLLLTDDREEAAMIAEEIDSMNKE
RQSIVSQIAEEAIKEVEEKYPAGENAVLVIGKEGWNAGVIGIVASRLVDKFYRPAIVLSFDKEKGTAKGSARSIAGFDLY
KNLSACRDILPHFGGHPMAAGMTLGLGDVGELRERLNGLAKEQLSDEDFIPVASLDAEVSLEDVSLPAIEQMQLLSPFGM
DNPKPRVLIKDAPIASMRKIGSGQNHLKMALGEGSSALDGIGFGLGELFHHISADSRISVIGELSINEWNNIRKPQIFLH
DLSVAEWQLFDLRGIKRFEQLKELLPESSTKWICFDGQSREKIPSLPEDAAFFISSETEAEALVIEEEHIVLADLPPSKQ
MLEKLLQGKAPARIYAHFYKEESEYFSTIPNRDHFKWFYSFLAKRGQFDIRKFGDQLAKHKGWSRETIDFMSKVFFELDF
AKMENGLLALNKEANKRDLTESPTYQRKHAQYTLENDLLYSSYQELKSWFDAVLQGAVHTEEAMEEWI

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=62515 N288_RS17460 WP_009796200.1 3443175..3445541(-) (recJ) [Bacillus infantis NRRL B-14911]
ATGTTAAAGTCAAAAACAAGATGGATTGTTCGTCAATCGGATAAAGATAAAGCTGACACACTGATCAGCGAATTGAAAAT
CAGTCCAATTGTGGCATCATTATTAGTGAATCGGGGGCTCGATACTCCTGAATCGGCACAGGATTTCCTGTACGGAAATA
ATGGGGAGTTCCACGACCCTTTTCTCCTGGCCGGGATGGATGCTGCAGTCTCACGAATAAATAAAGCGATAAACGAAAAT
GAACCGATTTTAATATATGGGGATTATGATGCAGACGGAGTCACAAGCACCTCTGTTATGATGATAACGCTCCGCAGCCT
GGGTGCCAATGTAGATTTCTACATACCTAACCGGTTTACGGAGGGATACGGCCCGAATGAGGGAGCATTCAGGCATGCGG
CCGAAATTGGCACCAAGCTGCTCATTACGGTGGATACCGGCATATCAGCAGTCCATGAGGCGTCCATTGCCAAAGAGCTG
GGCATGGACCTGATCATTACGGACCACCATGAACCCGGTCCGGTTCTCCCGGAGGCCCTGGCTATCATCCATCCCAAGCT
TGAGGGAAGCCTTTATCCTTTCCGCGAGCTTGCCGGAGTGGGCGTGGCCTTTAAGGTAGCTCACGCCCTATTGGGAAATA
TCCCCGAGGAGCTTCTGGAAATTGCTGCTATAGGAACCGTGGCCGACCTGGTATCTCTGAAAGGAGAGAACAGGCTCCTT
GTCCAGAGAGGGATCAAGAAGCTGAAGGTGACTAAAAGGGCCGGCCTGCTCGCGCTGTTCAAGCTGGCAAATGTGGAGCA
GGCTGCAGTAGATGAAGAAACCATAGGGTTCATGCTTGCTCCAAGGCTGAATGCTGCCGGCAGGCTGGACAGCGCAGATC
CGGCCGTCCATCTGCTGCTGACAGATGACCGGGAAGAAGCAGCTATGATTGCTGAAGAAATTGACAGCATGAACAAAGAG
AGGCAGTCCATTGTCAGCCAGATTGCCGAAGAGGCAATCAAAGAAGTCGAGGAAAAGTACCCGGCAGGGGAAAATGCTGT
TCTCGTTATCGGGAAGGAAGGCTGGAATGCCGGTGTGATCGGCATTGTAGCGTCAAGGCTTGTCGATAAATTCTACAGGC
CGGCCATCGTCCTCAGCTTTGATAAAGAAAAGGGGACGGCAAAAGGATCTGCCAGAAGCATAGCCGGATTTGATTTGTAT
AAAAATCTGTCTGCCTGCAGGGACATCCTGCCCCATTTTGGGGGCCATCCGATGGCTGCTGGGATGACGCTTGGGCTTGG
AGACGTGGGGGAGCTGCGGGAAAGGCTCAACGGCCTCGCGAAAGAGCAGCTCAGTGACGAGGATTTCATACCGGTCGCAA
GCCTCGATGCCGAGGTAAGCCTTGAAGATGTCAGCCTGCCTGCGATAGAACAAATGCAGCTTCTTTCCCCCTTTGGAATG
GACAATCCTAAACCGCGCGTCCTGATTAAGGATGCCCCCATTGCCAGCATGCGCAAGATAGGCTCCGGCCAGAATCATCT
TAAAATGGCACTTGGCGAGGGTTCATCCGCATTGGACGGAATCGGATTCGGCCTTGGGGAGCTGTTCCATCATATCTCGG
CAGATTCCCGGATATCCGTAATTGGTGAATTATCTATAAATGAATGGAATAATATAAGAAAACCGCAAATTTTTCTGCAC
GATTTATCTGTCGCCGAATGGCAGCTTTTTGATCTGAGAGGAATCAAGAGATTTGAACAGCTAAAGGAACTCCTTCCTGA
ATCAAGTACCAAGTGGATATGCTTTGACGGCCAAAGCCGGGAAAAGATTCCTTCATTGCCGGAAGATGCAGCTTTCTTCA
TAAGCTCTGAAACGGAAGCGGAAGCTCTGGTGATTGAAGAAGAGCATATAGTTCTTGCAGATCTGCCTCCTTCAAAACAG
ATGCTGGAAAAGCTCCTTCAGGGCAAAGCCCCTGCCAGGATCTATGCCCACTTCTATAAGGAAGAAAGCGAGTATTTCAG
CACGATCCCAAACAGGGACCATTTTAAGTGGTTTTATTCATTCCTGGCCAAAAGAGGCCAATTCGACATAAGAAAATTCG
GGGACCAGCTTGCCAAGCATAAAGGATGGAGCAGGGAAACAATTGATTTTATGTCAAAGGTGTTTTTTGAGCTGGACTTT
GCTAAAATGGAAAATGGGCTCTTGGCCCTTAATAAAGAGGCAAACAAGCGGGACCTGACAGAATCCCCGACATATCAAAG
GAAGCATGCACAATACACCCTTGAAAACGATTTGCTGTATTCTTCATACCAGGAGCTGAAAAGCTGGTTCGATGCAGTCC
TTCAAGGGGCGGTTCATACTGAGGAGGCAATGGAAGAATGGATTTGA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-770)

DHHA1 domain (DHHA1)

(315-438)

RecJ OB domain (RecJ_OB)

(456-561)

DHH family (DHH)

(83-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U5LGC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

56.041

98.731

0.553

Multiple sequence alignment