Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   N288_RS09020 Genome accession   NC_022524
Coordinates   1782397..1783176 (+) Length   259 a.a.
NCBI ID   WP_009795909.1    Uniprot ID   U5LAW1
Organism   Bacillus infantis NRRL B-14911     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1777397..1788176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N288_RS09000 (N288_09655) trmFO 1777925..1779232 (+) 1308 WP_009795913.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  N288_RS09005 (N288_09660) xerC 1779295..1780197 (+) 903 WP_035403504.1 tyrosine recombinase XerC -
  N288_RS09010 (N288_09665) hslV 1780220..1780762 (+) 543 WP_009795911.1 ATP-dependent protease subunit HslV -
  N288_RS09015 (N288_09670) hslU 1780874..1782280 (+) 1407 WP_009795910.1 HslU--HslV peptidase ATPase subunit -
  N288_RS09020 (N288_09675) codY 1782397..1783176 (+) 780 WP_009795909.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  N288_RS09025 (N288_09680) flgB 1783660..1784058 (+) 399 WP_022543712.1 flagellar basal body rod protein FlgB -
  N288_RS09030 (N288_09685) flgC 1784061..1784510 (+) 450 WP_009795906.1 flagellar basal body rod protein FlgC -
  N288_RS09035 (N288_09690) fliE 1784521..1784832 (+) 312 WP_009795905.1 flagellar hook-basal body complex protein FliE -
  N288_RS09040 (N288_09695) fliF 1784910..1786496 (+) 1587 WP_009795904.1 flagellar basal-body MS-ring/collar protein FliF -
  N288_RS09045 (N288_09700) fliG 1786509..1787525 (+) 1017 WP_009795903.1 flagellar motor switch protein FliG -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29016.43 Da        Isoelectric Point: 4.8413

>NTDB_id=62502 N288_RS09020 WP_009795909.1 1782397..1783176(+) (codY) [Bacillus infantis NRRL B-14911]
MDLLTKTRKINAMLQKAAGKPVNFKEMAETLSEVIEANIFVVSRRGKLLGFAVNQQIENERMKKMLEDRQFPEEYTKSLF
NIQETSSNLDVESDYTAFPVENKELFKNGLTTIVPIIGGGERLGTLILARLQEQFHDDDLILGEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGKEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLVELEKLKTS

Nucleotide


Download         Length: 780 bp        

>NTDB_id=62502 N288_RS09020 WP_009795909.1 1782397..1783176(+) (codY) [Bacillus infantis NRRL B-14911]
ATGGATTTATTAACGAAAACAAGAAAAATTAATGCAATGCTGCAGAAAGCTGCCGGAAAACCGGTAAACTTCAAAGAAAT
GGCCGAGACGCTTAGTGAAGTGATCGAAGCGAATATCTTTGTGGTAAGCCGCCGCGGAAAGCTGCTTGGCTTTGCAGTAA
ACCAGCAGATCGAAAATGAGCGCATGAAAAAAATGCTTGAAGACCGTCAATTCCCTGAAGAATACACCAAGAGCCTGTTC
AATATCCAGGAGACGTCTTCAAATCTTGATGTAGAAAGCGATTATACTGCTTTCCCTGTTGAAAACAAGGAGCTGTTTAA
GAACGGTCTGACAACGATCGTACCAATCATCGGGGGCGGAGAGCGCCTAGGTACGCTGATCCTCGCAAGGCTTCAGGAGC
AGTTCCATGACGATGATCTGATTCTTGGCGAATACGGTGCAACAGTTGTCGGTATGGAAATCCTGCGTGAAAAAGCGGAG
GAGATCGAGGAAGAGGCACGCAGCAAGGCTGTTGTACAAATGGCTATCAGCTCCCTTTCATACAGCGAGCTGGAAGCGAT
CGAGCATATCTTTGAAGAGCTTAACGGCAAAGAAGGCCTGCTTGTTGCTTCAAAAATTGCCGACAGAGTCGGAATTACGC
GTTCTGTCATCGTAAACGCATTGAGAAAGCTGGAGAGCGCAGGAGTCATTGAATCGCGTTCACTCGGCATGAAGGGAACC
TATATTAAAGTCCTGAACGATAAGTTCCTCGTCGAACTGGAAAAACTGAAAACAAGCTGA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U5LAW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

87.209

99.614

0.869
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.178

95.367

0.459

Multiple sequence alignment