Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   LMK00_RS10085 Genome accession   NZ_CP086395
Coordinates   2040703..2041638 (-) Length   311 a.a.
NCBI ID   WP_252175393.1    Uniprot ID   -
Organism   Lactococcus formosensis strain I4/6O     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2035703..2046638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMK00_RS10060 (LMK00_10055) - 2035754..2036614 (-) 861 WP_017368645.1 S1 RNA-binding domain-containing protein -
  LMK00_RS10065 (LMK00_10060) frr 2036721..2037278 (-) 558 WP_017368646.1 ribosome recycling factor -
  LMK00_RS10070 (LMK00_10065) pyrH 2037307..2038023 (-) 717 WP_017368647.1 UMP kinase -
  LMK00_RS10075 (LMK00_10070) - 2038114..2039307 (-) 1194 WP_017368648.1 acetate kinase -
  LMK00_RS10080 (LMK00_10075) - 2039425..2040618 (-) 1194 WP_017368649.1 acetate kinase -
  LMK00_RS10085 (LMK00_10080) comYH 2040703..2041638 (-) 936 WP_252175393.1 class I SAM-dependent methyltransferase Machinery gene
  LMK00_RS10090 (LMK00_10085) - 2041684..2041914 (-) 231 WP_017368651.1 DUF3165 family protein -
  LMK00_RS10095 (LMK00_10090) typA 2041989..2043830 (-) 1842 WP_017368652.1 translational GTPase TypA -
  LMK00_RS10100 (LMK00_10095) - 2044149..2044361 (+) 213 WP_003133311.1 YqgQ family protein -
  LMK00_RS10105 (LMK00_10100) - 2044354..2045322 (+) 969 WP_017368653.1 ROK family glucokinase -
  LMK00_RS10110 (LMK00_10105) - 2045339..2045719 (+) 381 WP_017368654.1 rhodanese-like domain-containing protein -
  LMK00_RS10115 (LMK00_10110) - 2045759..2046205 (-) 447 WP_096369051.1 Dps family protein -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 34977.97 Da        Isoelectric Point: 4.5506

>NTDB_id=624758 LMK00_RS10085 WP_252175393.1 2040703..2041638(-) (comYH) [Lactococcus formosensis strain I4/6O]
MDIEKIEKAFGLVLENIMAIQAELMTDFYDAFVEQNAAYLGALELASLTKENNDKVRSMNLTKSEWQKLFQFVLLQGSRI
APMQANHNLTPDSIGFIFNFIIEELHKDRAIRVLEFGSGTGNLAETLLVHLQKEVDYVGFEVDDLLLDLSASMSEVMGTE
ASFLQMDAVKPQPLEAVDVVLSDLPVGYYPDDEAASHFQVHDKSEHTYVHHLMIEQSFKYLKESGFALFLAPDNLLTSAQ
SEFLKAWIKEHAHIAAVITLPSSLFKGAGKSIYLLSKNQTNTPTFVYPLSDLSDRSILQEFMSEFVKNVKI

Nucleotide


Download         Length: 936 bp        

>NTDB_id=624758 LMK00_RS10085 WP_252175393.1 2040703..2041638(-) (comYH) [Lactococcus formosensis strain I4/6O]
ATGGATATAGAGAAAATCGAAAAAGCTTTTGGATTGGTCCTTGAGAATATCATGGCAATTCAAGCAGAGCTGATGACGGA
TTTTTATGATGCTTTTGTGGAACAAAATGCAGCTTACTTAGGCGCCTTAGAGCTGGCGTCACTGACGAAGGAAAATAACG
ATAAAGTTCGCTCAATGAATCTTACGAAAAGTGAATGGCAAAAGCTGTTTCAGTTTGTCTTGTTACAAGGCTCTCGTATT
GCACCGATGCAAGCAAATCATAATTTAACACCGGACTCTATTGGTTTTATCTTTAATTTCATCATTGAAGAGTTGCACAA
GGACCGAGCGATTCGCGTGTTAGAGTTTGGTTCAGGAACGGGGAATTTAGCGGAAACGCTCTTGGTTCATCTGCAAAAAG
AAGTAGACTATGTTGGTTTTGAAGTAGACGATCTCTTGTTGGATTTATCTGCTTCAATGTCAGAAGTTATGGGAACAGAA
GCAAGTTTTCTCCAAATGGATGCTGTTAAACCTCAGCCCTTGGAAGCTGTGGACGTTGTCCTAAGTGATCTCCCAGTTGG
TTATTATCCAGACGATGAAGCTGCTAGCCATTTTCAAGTACATGACAAATCAGAACATACCTATGTGCACCACTTAATGA
TCGAGCAATCCTTCAAGTATTTGAAAGAGAGTGGCTTTGCACTTTTCTTAGCTCCAGATAATCTTTTGACAAGTGCACAG
TCAGAGTTTTTGAAGGCCTGGATTAAAGAACATGCGCATATTGCTGCAGTCATTACATTACCTTCATCCCTCTTTAAAGG
GGCAGGAAAATCGATTTATTTATTAAGTAAAAACCAGACAAATACACCGACTTTTGTTTATCCCTTGTCTGACTTATCAG
ACCGCTCTATTTTGCAAGAATTTATGTCTGAGTTTGTGAAAAATGTCAAGATTTGA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(173-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

50

99.678

0.498
  comYH Streptococcus mutans UA159

49.677

99.678

0.495