Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LMK00_RS00375 Genome accession   NZ_CP086395
Coordinates   75751..76542 (+) Length   263 a.a.
NCBI ID   WP_252175503.1    Uniprot ID   A0A9Q8Y1T9
Organism   Lactococcus formosensis strain I4/6O     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 70751..81542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMK00_RS00345 (LMK00_00345) rpmH 71462..71596 (+) 135 WP_003135255.1 50S ribosomal protein L34 -
  LMK00_RS00350 (LMK00_00350) - 71745..72656 (+) 912 WP_252175502.1 aldo/keto reductase -
  LMK00_RS00355 (LMK00_00355) - 72835..73101 (+) 267 WP_003133629.1 IreB family regulatory phosphoprotein -
  LMK00_RS00360 (LMK00_00360) ruvX 73101..73529 (+) 429 WP_017368693.1 Holliday junction resolvase RuvX -
  LMK00_RS00365 (LMK00_00365) - 73544..73867 (+) 324 WP_003133632.1 DUF1292 domain-containing protein -
  LMK00_RS00370 (LMK00_00370) - 74007..75614 (+) 1608 WP_017368694.1 hypothetical protein -
  LMK00_RS00375 (LMK00_00375) codY 75751..76542 (+) 792 WP_252175503.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LMK00_RS00380 (LMK00_00380) gatC 76689..76994 (+) 306 WP_017368695.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  LMK00_RS00385 (LMK00_00385) gatA 76994..78466 (+) 1473 WP_213432756.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  LMK00_RS00390 (LMK00_00390) gatB 78468..79901 (+) 1434 WP_252175504.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  LMK00_RS00395 (LMK00_00395) - 79916..81271 (-) 1356 WP_252175505.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 29180.60 Da        Isoelectric Point: 4.7260

>NTDB_id=624719 LMK00_RS00375 WP_252175503.1 75751..76542(+) (codY) [Lactococcus formosensis strain I4/6O]
MATLLEKTRKITSVLQDGVTDLKQELPYDNMTERLANVIDCNACIIDTKGKLLGYSLPYEINNDRVNELFHVQKQLPEDY
ARAAIRIYDTLANITINEPLSVFPAELLGEYPNGLTTCAPIYGSGMRLGTFILWRTDGKFSDDDLVLAELATTVIGVQLS
NLKIEQMEENIRKDTMANMAVNTLSYSEMKAVKAILEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSL
GMKGTYLKVLNQGLFTKLEGRNF

Nucleotide


Download         Length: 792 bp        

>NTDB_id=624719 LMK00_RS00375 WP_252175503.1 75751..76542(+) (codY) [Lactococcus formosensis strain I4/6O]
GTGGCTACTTTACTAGAAAAAACCCGCAAAATTACATCAGTTCTGCAAGATGGAGTAACTGATTTAAAGCAGGAGTTACC
CTATGATAACATGACAGAGCGTTTAGCCAACGTTATTGACTGTAATGCTTGTATCATTGATACAAAAGGGAAGCTTTTGG
GCTATTCACTGCCATACGAAATTAACAACGATCGTGTTAATGAACTTTTCCATGTACAAAAACAATTGCCAGAAGATTAT
GCACGTGCGGCTATCCGTATCTATGACACTTTAGCAAATATCACAATTAACGAGCCTTTGTCAGTATTTCCTGCAGAACT
TTTAGGTGAGTATCCTAATGGTTTGACAACATGTGCACCAATCTATGGTAGTGGTATGCGTTTGGGAACCTTCATCTTAT
GGCGTACAGACGGAAAATTCAGTGATGATGATCTTGTGCTTGCAGAGCTTGCAACAACAGTTATCGGTGTTCAACTTTCA
AATCTTAAGATTGAACAAATGGAAGAAAATATCCGTAAAGACACAATGGCTAACATGGCAGTCAATACACTTTCGTATTC
AGAAATGAAGGCTGTGAAAGCAATTCTTGAAGAACTTGATGGTGAAGAAGGACATGTTATTGCTTCAGTCATTGCCGACA
AGATTGGAATTACACGTTCAGTAATCGTTAATGCACTACGTAAGCTTGAATCTGCTGGTGTTATTGAAAGCCGTTCGTTG
GGAATGAAAGGGACTTACCTCAAAGTTCTTAACCAAGGTTTATTTACAAAGCTTGAAGGTCGTAACTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-259)

CodY GAF-like domain (CodY)

(3-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

81.749

100

0.817
  codY Bacillus subtilis subsp. subtilis str. 168

49.609

97.338

0.483