Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   LMT64_RS05250 Genome accession   NZ_CP086380
Coordinates   1023273..1023869 (+) Length   198 a.a.
NCBI ID   WP_126350777.1    Uniprot ID   A0A3S0ICU8
Organism   Deinococcus radiophilus strain ATCC 27603     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1018273..1028869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMT64_RS05225 (LMT64_05225) prfA 1019310..1020425 (+) 1116 WP_126350773.1 peptide chain release factor 1 -
  LMT64_RS05230 (LMT64_05230) - 1020412..1020912 (+) 501 WP_126350774.1 NUDIX hydrolase -
  LMT64_RS05235 (LMT64_05235) - 1020914..1021909 (+) 996 WP_126350775.1 RluA family pseudouridine synthase -
  LMT64_RS05240 (LMT64_05240) infC 1021997..1022615 (-) 619 Protein_1029 translation initiation factor IF-3 -
  LMT64_RS05245 (LMT64_05245) - 1022855..1023145 (+) 291 WP_126350776.1 YbaB/EbfC family nucleoid-associated protein -
  LMT64_RS05250 (LMT64_05250) recR 1023273..1023869 (+) 597 WP_126350777.1 recombination mediator RecR Machinery gene
  LMT64_RS05255 (LMT64_05255) - 1024156..1024605 (+) 450 WP_126350778.1 MarR family transcriptional regulator -
  LMT64_RS05260 (LMT64_05260) - 1024643..1026574 (+) 1932 WP_126350779.1 helix-turn-helix domain-containing protein -
  LMT64_RS05265 (LMT64_05265) hpt 1026629..1027177 (+) 549 WP_126350780.1 hypoxanthine phosphoribosyltransferase -
  LMT64_RS05270 (LMT64_05270) - 1027246..1027962 (-) 717 WP_126350987.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21435.65 Da        Isoelectric Point: 4.7763

>NTDB_id=624653 LMT64_RS05250 WP_126350777.1 1023273..1023869(+) (recR) [Deinococcus radiophilus strain ATCC 27603]
MKYPPSLVALIRELSRLPGIGPKSAQRLAFHLFEQPAEDIERLSAALLSAKSELHTCPVCFNITDAELCSVCSDPSRDQN
TICVVEEPGDVIALERSGEFQGLYHVLHGVLSPMNGVGPEQLRIKELLPRTTDGMEVILATGTTVEGDATALYLQRLLDP
LGAEVTRIAYGLQVGAALEYADEVTLGRALLGRQKIRG

Nucleotide


Download         Length: 597 bp        

>NTDB_id=624653 LMT64_RS05250 WP_126350777.1 1023273..1023869(+) (recR) [Deinococcus radiophilus strain ATCC 27603]
GTGAAATATCCACCCAGTCTGGTCGCCCTGATCCGTGAACTGTCGCGCCTGCCCGGTATCGGGCCGAAAAGCGCTCAGCG
GCTGGCCTTCCACCTGTTTGAACAGCCCGCTGAGGATATTGAGCGGCTCTCGGCAGCACTCCTCTCGGCCAAATCTGAAT
TGCACACCTGCCCAGTGTGCTTCAACATCACCGACGCCGAACTGTGCAGCGTGTGCAGCGACCCAAGCCGCGATCAGAAC
ACCATCTGCGTGGTCGAGGAACCCGGCGACGTGATCGCTCTGGAGCGCAGCGGCGAGTTCCAGGGACTGTATCACGTGCT
GCATGGCGTCCTGAGCCCTATGAACGGCGTGGGGCCGGAACAGCTACGGATCAAGGAACTGCTGCCGCGTACCACAGACG
GCATGGAAGTGATTCTGGCGACTGGCACCACCGTGGAAGGCGACGCCACTGCGCTGTATCTGCAGCGGTTGCTGGACCCC
CTGGGTGCCGAAGTGACCCGAATTGCTTACGGTCTGCAAGTCGGCGCGGCCCTGGAGTACGCCGACGAGGTCACGCTGGG
CCGCGCGCTGTTGGGCCGTCAGAAGATCCGGGGCTGA

Domains

Predicted by InterproScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(81-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S0ICU8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

82.653

98.99

0.818