Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LMT64_RS02840 Genome accession   NZ_CP086380
Coordinates   530397..531041 (-) Length   214 a.a.
NCBI ID   WP_126352529.1    Uniprot ID   A0A3S0KFX1
Organism   Deinococcus radiophilus strain ATCC 27603     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 525397..536041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMT64_RS02810 (LMT64_02810) - 525431..526330 (-) 900 WP_126352523.1 DUF1028 domain-containing protein -
  LMT64_RS02815 (LMT64_02815) glgC 526402..527652 (-) 1251 WP_170166018.1 glucose-1-phosphate adenylyltransferase -
  LMT64_RS02820 (LMT64_02820) miaA 528061..528975 (-) 915 WP_126352525.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  LMT64_RS02825 (LMT64_02825) - 529051..529485 (+) 435 WP_126352526.1 Hsp20/alpha crystallin family protein -
  LMT64_RS02830 (LMT64_02830) - 529482..529709 (+) 228 WP_126352527.1 RNA-binding S4 domain-containing protein -
  LMT64_RS02835 (LMT64_02835) - 529706..530254 (+) 549 WP_229253329.1 DUF1684 domain-containing protein -
  LMT64_RS02840 (LMT64_02840) comF 530397..531041 (-) 645 WP_126352529.1 ComF family protein Machinery gene
  LMT64_RS02845 (LMT64_02845) - 531205..531645 (+) 441 WP_126352530.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  LMT64_RS02850 (LMT64_02850) aroC 531862..533013 (-) 1152 WP_229253330.1 chorismate synthase -
  LMT64_RS02855 (LMT64_02855) - 533085..535037 (-) 1953 WP_126352532.1 secretin N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23063.53 Da        Isoelectric Point: 9.5419

>NTDB_id=624649 LMT64_RS02840 WP_126352529.1 530397..531041(-) (comF) [Deinococcus radiophilus strain ATCC 27603]
MALREQLGALLRLALPRACPGCGAQLGSEAGLCIRCRSQLRPHTERYSLLSPGPVPHLVSLGRYQGPVRRTVRALKYGQA
REVAEVLGTALASAIPNAWQIVGVVPVPLHPLRERERGFNQAALLAEAIADTLQVPYAPQALQRVRRTQQQAKLSGDQRR
QNVSGAFVADASQLSEGAVLLVDDVLTTGSTLLACRDALRAQGVEDFYYAVAAH

Nucleotide


Download         Length: 645 bp        

>NTDB_id=624649 LMT64_RS02840 WP_126352529.1 530397..531041(-) (comF) [Deinococcus radiophilus strain ATCC 27603]
ATGGCCCTGCGTGAACAGCTCGGTGCTCTGCTGCGGCTGGCCCTGCCCCGTGCCTGCCCTGGTTGCGGTGCCCAGCTGGG
TTCAGAGGCGGGTCTGTGTATACGCTGCCGCAGCCAACTGCGCCCCCACACCGAGCGGTACTCACTGCTGTCGCCCGGTC
CGGTGCCCCATCTGGTCAGCCTGGGCCGCTATCAGGGGCCAGTGCGCCGAACCGTTCGCGCCCTCAAATACGGCCAGGCA
CGGGAAGTGGCCGAGGTATTAGGGACAGCCTTGGCCTCCGCCATCCCGAACGCTTGGCAGATCGTCGGCGTGGTGCCGGT
TCCCCTGCACCCTCTGCGCGAGCGCGAACGTGGCTTCAATCAGGCGGCACTCCTGGCCGAAGCTATTGCCGACACCCTGC
AAGTTCCTTACGCCCCCCAAGCACTGCAGCGGGTCCGGCGCACCCAGCAACAGGCCAAGCTGAGCGGCGACCAGCGGCGG
CAAAATGTTTCGGGGGCCTTTGTCGCGGACGCTTCACAGCTGTCGGAAGGTGCGGTGCTGCTGGTAGACGATGTTCTGAC
GACCGGATCTACCCTGCTTGCCTGCCGTGATGCGTTGCGGGCACAGGGAGTAGAGGATTTTTACTATGCCGTCGCCGCCC
ACTAG

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(10-46)

Phosphoribosyl transferase domain (Pribosyltran)

(122-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S0KFX1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.745

95.327

0.598