Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | LMD38_RS07990 | Genome accession | NZ_CP086328 |
| Coordinates | 1510942..1511721 (+) | Length | 259 a.a. |
| NCBI ID | WP_000421288.1 | Uniprot ID | Q81WK7 |
| Organism | Bacillus pacificus strain anQ-h4 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1472052..1527161 | 1510942..1511721 | within | 0 |
Gene organization within MGE regions
Location: 1472052..1527161
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LMD38_RS07800 (LMD38_07800) | rsmB | 1472274..1473608 (+) | 1335 | WP_016718310.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| LMD38_RS07805 (LMD38_07805) | rlmN | 1473613..1474701 (+) | 1089 | WP_000450543.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| LMD38_RS07810 (LMD38_07810) | - | 1474706..1475458 (+) | 753 | WP_000648696.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| LMD38_RS07815 (LMD38_07815) | prkC | 1475467..1477440 (+) | 1974 | WP_016718309.1 | serine/threonine protein kinase PrkC | - |
| LMD38_RS07820 (LMD38_07820) | rsgA | 1477709..1478590 (+) | 882 | WP_001113936.1 | ribosome small subunit-dependent GTPase A | - |
| LMD38_RS07825 (LMD38_07825) | rpe | 1478593..1479237 (+) | 645 | WP_000589966.1 | ribulose-phosphate 3-epimerase | - |
| LMD38_RS07830 (LMD38_07830) | - | 1479337..1480017 (+) | 681 | WP_062821669.1 | thiamine diphosphokinase | - |
| LMD38_RS07835 (LMD38_07835) | spoVM | 1480084..1480164 (+) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| LMD38_RS07840 (LMD38_07840) | rpmB | 1480238..1480426 (-) | 189 | WP_000124776.1 | 50S ribosomal protein L28 | - |
| LMD38_RS07845 (LMD38_07845) | - | 1480805..1481167 (+) | 363 | WP_000021109.1 | Asp23/Gls24 family envelope stress response protein | - |
| LMD38_RS07850 (LMD38_07850) | - | 1481190..1482866 (+) | 1677 | WP_000027110.1 | DAK2 domain-containing protein | - |
| LMD38_RS07855 (LMD38_07855) | recG | 1483156..1485204 (+) | 2049 | WP_061183962.1 | ATP-dependent DNA helicase RecG | - |
| LMD38_RS07860 (LMD38_07860) | fapR | 1485293..1485886 (+) | 594 | WP_000747357.1 | transcription factor FapR | - |
| LMD38_RS07865 (LMD38_07865) | plsX | 1485883..1486875 (+) | 993 | WP_000684108.1 | phosphate acyltransferase PlsX | - |
| LMD38_RS07870 (LMD38_07870) | fabD | 1486890..1487834 (+) | 945 | WP_061183964.1 | ACP S-malonyltransferase | - |
| LMD38_RS07875 (LMD38_07875) | fabG | 1487834..1488574 (+) | 741 | WP_000911784.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| LMD38_RS07880 (LMD38_07880) | acpP | 1488644..1488877 (+) | 234 | WP_000786062.1 | acyl carrier protein | - |
| LMD38_RS07885 (LMD38_07885) | rncS | 1488936..1489673 (+) | 738 | WP_001146876.1 | ribonuclease III | - |
| LMD38_RS07890 (LMD38_07890) | smc | 1489821..1493390 (+) | 3570 | WP_228920245.1 | chromosome segregation protein SMC | - |
| LMD38_RS07895 (LMD38_07895) | ftsY | 1493406..1494395 (+) | 990 | WP_000007647.1 | signal recognition particle-docking protein FtsY | - |
| LMD38_RS07900 (LMD38_07900) | - | 1494529..1494861 (+) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| LMD38_RS07905 (LMD38_07905) | ffh | 1494874..1496223 (+) | 1350 | WP_000863461.1 | signal recognition particle protein | - |
| LMD38_RS07910 (LMD38_07910) | rpsP | 1496324..1496596 (+) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| LMD38_RS07915 (LMD38_07915) | - | 1496611..1496838 (+) | 228 | WP_000737403.1 | KH domain-containing protein | - |
| LMD38_RS07920 (LMD38_07920) | rimM | 1496960..1497475 (+) | 516 | WP_000170268.1 | ribosome maturation factor RimM | - |
| LMD38_RS07925 (LMD38_07925) | trmD | 1497475..1498209 (+) | 735 | WP_016718304.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| LMD38_RS07930 (LMD38_07930) | rplS | 1498356..1498700 (+) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| LMD38_RS07935 (LMD38_07935) | lepB | 1498802..1499353 (+) | 552 | WP_000711857.1 | signal peptidase I | - |
| LMD38_RS07940 (LMD38_07940) | ylqF | 1499374..1500264 (+) | 891 | WP_000236698.1 | ribosome biogenesis GTPase YlqF | - |
| LMD38_RS07945 (LMD38_07945) | rnhB | 1500316..1501089 (+) | 774 | WP_001174724.1 | ribonuclease HII | - |
| LMD38_RS07950 (LMD38_07950) | sucC | 1501283..1502443 (+) | 1161 | WP_001020785.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| LMD38_RS07955 (LMD38_07955) | sucD | 1502463..1503365 (+) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| LMD38_RS07960 (LMD38_07960) | dprA | 1503453..1504322 (+) | 870 | WP_000818028.1 | DNA-processing protein DprA | - |
| LMD38_RS07965 (LMD38_07965) | topA | 1504467..1506545 (+) | 2079 | WP_001286972.1 | type I DNA topoisomerase | - |
| LMD38_RS07970 (LMD38_07970) | trmFO | 1506596..1507900 (+) | 1305 | WP_012644562.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| LMD38_RS07975 (LMD38_07975) | xerC | 1507966..1508865 (+) | 900 | WP_016718302.1 | tyrosine recombinase XerC | - |
| LMD38_RS07980 (LMD38_07980) | hslV | 1508908..1509450 (+) | 543 | WP_000526271.1 | ATP-dependent protease proteolytic subunit HslV | - |
| LMD38_RS07985 (LMD38_07985) | hslU | 1509473..1510864 (+) | 1392 | WP_000550081.1 | ATP-dependent protease ATPase subunit HslU | - |
| LMD38_RS07990 (LMD38_07990) | codY | 1510942..1511721 (+) | 780 | WP_000421288.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| LMD38_RS07995 (LMD38_07995) | rpsB | 1512070..1512771 (+) | 702 | WP_000111483.1 | 30S ribosomal protein S2 | - |
| LMD38_RS08000 (LMD38_08000) | tsf | 1512875..1513762 (+) | 888 | WP_001018580.1 | translation elongation factor Ts | - |
| LMD38_RS08005 (LMD38_08005) | pyrH | 1513829..1514551 (+) | 723 | WP_000042663.1 | UMP kinase | - |
| LMD38_RS08010 (LMD38_08010) | frr | 1514554..1515111 (+) | 558 | WP_000531500.1 | ribosome recycling factor | - |
| LMD38_RS08015 (LMD38_08015) | uppS | 1515197..1515973 (+) | 777 | WP_000971300.1 | isoprenyl transferase | - |
| LMD38_RS08020 (LMD38_08020) | cdsA | 1515991..1516782 (+) | 792 | WP_000813584.1 | phosphatidate cytidylyltransferase | - |
| LMD38_RS08025 (LMD38_08025) | dxr | 1516806..1517948 (+) | 1143 | WP_000790363.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| LMD38_RS08030 (LMD38_08030) | rseP | 1517965..1519221 (+) | 1257 | WP_001090246.1 | RIP metalloprotease RseP | - |
| LMD38_RS08035 (LMD38_08035) | - | 1519331..1521031 (+) | 1701 | WP_000814305.1 | proline--tRNA ligase | - |
| LMD38_RS08040 (LMD38_08040) | - | 1521156..1525457 (+) | 4302 | WP_062821668.1 | PolC-type DNA polymerase III | - |
| LMD38_RS08045 (LMD38_08045) | rimP | 1525790..1526260 (+) | 471 | WP_000359097.1 | ribosome maturation factor RimP | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28774.05 Da Isoelectric Point: 4.7947
>NTDB_id=624305 LMD38_RS07990 WP_000421288.1 1510942..1511721(+) (codY) [Bacillus pacificus strain anQ-h4]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=624305 LMD38_RS07990 WP_000421288.1 1510942..1511721(+) (codY) [Bacillus pacificus strain anQ-h4]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGCTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGTGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGCTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGTGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.081 |
100 |
0.811 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |