Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LMD38_RS05035 Genome accession   NZ_CP086328
Coordinates   971999..974335 (+) Length   778 a.a.
NCBI ID   WP_062821257.1    Uniprot ID   -
Organism   Bacillus pacificus strain anQ-h4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 966999..979335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMD38_RS05015 (LMD38_05015) cymR 968404..968820 (+) 417 WP_000704116.1 cysteine metabolism transcriptional regulator CymR -
  LMD38_RS05020 (LMD38_05020) - 968856..970001 (+) 1146 WP_062821255.1 cysteine desulfurase family protein -
  LMD38_RS05025 (LMD38_05025) mnmA 970018..971133 (+) 1116 WP_001038008.1 tRNA 2-thiouridine(34) synthase MnmA -
  LMD38_RS05030 (LMD38_05030) - 971244..971903 (+) 660 WP_062821256.1 tetratricopeptide repeat protein -
  LMD38_RS05035 (LMD38_05035) recD2 971999..974335 (+) 2337 WP_062821257.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LMD38_RS05040 (LMD38_05040) - 974463..974651 (+) 189 WP_000469281.1 hypothetical protein -
  LMD38_RS05045 (LMD38_05045) - 974670..974798 (+) 129 WP_001053553.1 YrzQ family protein -
  LMD38_RS05050 (LMD38_05050) - 974835..975047 (-) 213 WP_000242550.1 hypothetical protein -
  LMD38_RS05055 (LMD38_05055) - 975223..976293 (+) 1071 WP_000793116.1 AI-2E family transporter -
  LMD38_RS05060 (LMD38_05060) - 976329..976673 (-) 345 WP_000209593.1 PH domain-containing protein -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87372.87 Da        Isoelectric Point: 5.2015

>NTDB_id=624297 LMD38_RS05035 WP_062821257.1 971999..974335(+) (recD2) [Bacillus pacificus strain anQ-h4]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPEALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMRKDQLVRETMSLLNNQEGRVTEEDIIGCIEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGEIEEQLSVQYAPLQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=624297 LMD38_RS05035 WP_062821257.1 971999..974335(+) (recD2) [Bacillus pacificus strain anQ-h4]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAGTTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACGTACGACGAAAAAAAAGTGATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTGTTTACGTTGACAGGGCATTTTAAAGACCATCCGAAGTATGGG
AAACAATATTTAGTTGAAACGTTTAAGAAAGAATTGCCGCAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGGATAGGAAAGCGTACAGCTGAAAAAATTGTGGACCATCTAGGGGAACATGCTATTTCTAAAATTATGGATG
ATCCTGAGGCTTTAAATGGTGTTGTAAACAAGCAAAAAGCGCAAGAAATATATGAGACAATTGTTGAACATCAAGGATTA
GAGAAAGTAATGAGTTTTTTAAATGGTTATGGTTTTGGAACGAAGCTTTCTATTAAGATTTACCAACAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAATCCATATCAACTTATTGAAGAAGTGGATGGAATTGGATTTGGAAGAGCGGATGATA
TAGGACGTGCGTTAGGGATATCGGGTAATCATGATGATCGTGTACGTGCGGGATGTTTTTATACGTTAGAGAATGTATCA
TTACAACTTGGTCACGTTTATATGAGAAAAGATCAACTTGTAAGAGAAACGATGTCACTTTTAAATAATCAAGAAGGAAG
AGTGACGGAGGAAGACATTATAGGTTGTATTGAAATGATGCAAAGTGAAGGGAAAGTCATCATCGAGGAAGAACGAGTGT
ATTTGGCATCGTTATTCTACTCTGAAAAAGGTGTTGTAAAGTCTATTCGCAGGCTCATGAATCAGGAGGAAACACCTTCA
TTCCCTGAAGCAGAAGTGTTAAAGACGTTAGGTGAAATTGAAGAACAACTGAGCGTACAGTATGCACCACTTCAGCAAGA
AGCAATTCAAACGGCACTTCATAAACCGATGATGTTATTGACAGGTGGACCAGGAACAGGAAAAACAACAGTTATTAAAG
GAATTGTTGAAATGTATGCGTCACTTCACGGGCTATCGTTAAATCCGAATGAATACAGTGATGATAATCCATTTCCGATA
TTATTAACGGCTCCAACAGGAAGGGCAGCGAAGCGAATGAGTGAATCGACAGGACTTCCAGCTTGTACAATTCACCGTTT
ACTTGGCTGGACGCCAGAAGGGTCTTTCCAGCGTAATGAAACAGATCCGGTACAAGGGAAGTTGCTTATTATTGATGAAT
TTTCAATGGTTGATATTTGGCTTGCAAATCAGCTGTTTAAGTCATTGCCGACGAACATTCAAGTTATCGTTGTAGGTGAT
GAAGATCAATTACCATCTGTAGGACCTGGACAAGTATTGAAAGATTTATTGAATGCAGGTGCAGTTCCAACTGTAAAGCT
TACTGAAATTTATCGTCAAGCGGAAGGTTCATCAGTAATTCAACTTGCTCATGCGATAAAAAATGGAACACTCCCACCAG
ATTTAGCGCAAAATCAAAAAGATCGTTCATTTATCGGCTGCACAGGAGCTCAAATTGTTGAGGTTGTTAAGAAGGTTTGT
GAAAATGCTAAGACAAAAGGTTTTAGCGCAAGAGATGTACAAGTATTGGCCCCGATGTATCGTGGACCGGCCGGTATTAA
TGTACTAAACGAAGCGTTGCAAGAAGTATTTAATCCGAAAAGGGAAAAGAGTAAAGAAATTGCTTATGGTGATGTTGTAT
ATCGAAGAGGCGATAAAGTTTTGCAACTCGTTAATCAGCCGGAGAGTCAAGTGTTTAATGGTGATATCGGAGAAATTGTT
TCGGTGTTTTATGCGAAAGAAAACGTTGAGCAACAAGATATGATTATCGTTTCATTTGATGGAATTGAGGTAACATATAC
AAAACCAGATTTAAATCAAATTACACATGCCTATTGCTGTTCCATTCATAAATCGCAAGGTAGTGAGTTTCCGATTGTAA
TTATGCCGATAGTAAAAAGTTATAATCGTATGTTACGTCGTAATTTAATTTATACTGGTATTACAAGAAGTAAGAAGTTC
CTTATTATTTGCGGGGAGGAAGCTGCTTTCCAGTCTGGTGTAAACCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
GAGTCGATTGCAGGAATCGCAAGGAGAAGTACAGATGGTAACAGTGAATGGCGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

AAA domain (AAA_30)

(341-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.143

100

0.581