Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LLY41_RS06175 Genome accession   NZ_CP086235
Coordinates   1240315..1242741 (+) Length   808 a.a.
NCBI ID   WP_304587185.1    Uniprot ID   -
Organism   Cytobacillus firmus strain T8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1235315..1247741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLY41_RS06155 (LLY41_06165) cymR 1236520..1236939 (+) 420 WP_095245932.1 cysteine metabolism transcriptional regulator CymR -
  LLY41_RS06160 (LLY41_06170) - 1237008..1238150 (+) 1143 WP_304587182.1 cysteine desulfurase family protein -
  LLY41_RS06165 (LLY41_06175) mnmA 1238392..1239507 (+) 1116 WP_304587183.1 tRNA 2-thiouridine(34) synthase MnmA -
  LLY41_RS06170 (LLY41_06180) - 1239623..1240288 (+) 666 WP_095245929.1 tetratricopeptide repeat protein -
  LLY41_RS06175 (LLY41_06185) recD2 1240315..1242741 (+) 2427 WP_304587185.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LLY41_RS06180 (LLY41_06190) - 1242844..1242993 (+) 150 WP_179289091.1 hypothetical protein -
  LLY41_RS06185 (LLY41_06195) - 1243115..1243585 (+) 471 WP_095245927.1 PRC-barrel domain-containing protein -
  LLY41_RS06190 (LLY41_06200) - 1243601..1243792 (+) 192 WP_095245926.1 hypothetical protein -
  LLY41_RS06195 (LLY41_06205) - 1243819..1243953 (+) 135 WP_081757307.1 YrzQ family protein -
  LLY41_RS06200 (LLY41_06210) - 1244075..1245163 (+) 1089 WP_304587187.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 808 a.a.        Molecular weight: 91239.23 Da        Isoelectric Point: 4.8510

>NTDB_id=623896 LLY41_RS06175 WP_304587185.1 1240315..1242741(+) (recD2) [Cytobacillus firmus strain T8]
MEKQDSMDLFAEQGKFIKGRHLVTIFHNEQNLYTVVRIRVDETNDSYDEKEAVITGYLPKMHEQETYIFYGEFKDHPKFG
IQFHASHYRKDLPQTKQGVANYLSSELFKGIGKKTAEQIVETLGEDAITRILNQPSLLDSVPKLSPEKAKLLYDTLMEHQ
GLEQAMIALNQYGFGPQLSMRIYQVYKETTIEVVQNNPYKLVEDIEGVGFGRADELGYQIGISGNHPDRIKAACLYILET
ESMQAGHVYIEAKLLLQSVKKLLEENKRDLIEYKDISNELIKLEEEGKIMAEGQKIFLPSLYFSEKGLVTNIKRILNQTQ
YDEQFPESEFLLALGNLEERLGVQYAPTQKEAIQTALMSPMLILTGGPGTGKTTVIKGIVELYAELHGCSLEPKDYKKEE
PFPFLLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGSEGFDRHEESPLEGRILIVDETSMVDIWLANQLFKALPENMQVI
LVGDEDQLPSVGPGQVLKDLLRSERIPTVRLTDIYRQAEGSSIIELAHEMKKGKLPANISAQQSDRSFIKCQPGQIADVV
EKVVLNAKKKGYSSKDIQVLAPMYRGPAGIDRLNEILQEILNPNPDGSRKELSFGDVKYRIGDKVLQLVNQPENNVFNGD
MGEIVSIFFAKENTEKQDMIVVTFDGAEATYTKQDLNQITHAYCCSVHKSQGSEFPIVIMPVVKSYYRMLRRNLLYTAIT
RSRQFLILCGEEDALKIGVERADEQARLTTLSEKLRDAILFNDETELEDTAESSLTETLSLEEKLLQADPMIGMGNITPY
DFLEKEYS

Nucleotide


Download         Length: 2427 bp        

>NTDB_id=623896 LLY41_RS06175 WP_304587185.1 1240315..1242741(+) (recD2) [Cytobacillus firmus strain T8]
ATGGAAAAACAGGATTCCATGGATCTTTTTGCCGAACAGGGGAAGTTCATAAAGGGCAGACATCTGGTCACTATCTTTCA
TAATGAGCAAAACTTATATACGGTTGTGCGCATTAGGGTTGATGAAACGAATGACTCTTATGATGAAAAAGAAGCAGTCA
TTACCGGCTATCTGCCAAAGATGCATGAGCAAGAAACCTATATTTTTTATGGTGAATTCAAAGACCACCCTAAGTTCGGC
ATCCAATTCCATGCAAGCCATTACAGGAAAGATCTTCCCCAGACGAAACAAGGCGTAGCCAATTATTTATCAAGTGAATT
ATTTAAAGGGATTGGCAAGAAAACAGCCGAGCAAATCGTGGAGACACTTGGAGAAGATGCGATTACTCGTATTCTAAATC
AGCCGTCCCTGCTCGATAGTGTTCCCAAGCTGTCACCTGAAAAAGCTAAATTGCTTTACGATACGCTGATGGAACACCAG
GGCCTTGAGCAAGCCATGATCGCACTGAATCAATATGGCTTTGGCCCGCAGCTTTCCATGAGAATTTACCAGGTCTATAA
AGAAACGACAATTGAAGTCGTTCAAAATAATCCTTATAAGCTGGTTGAGGATATAGAAGGGGTCGGATTTGGCCGTGCTG
ACGAACTGGGATATCAAATCGGAATATCAGGCAATCATCCTGACCGTATAAAAGCTGCCTGCCTCTACATATTGGAAACG
GAGAGCATGCAGGCAGGCCATGTTTATATTGAAGCAAAGCTTCTTTTGCAAAGTGTGAAGAAGCTGCTGGAGGAAAATAA
GCGTGATTTGATTGAATACAAGGATATTTCCAATGAACTGATTAAGCTTGAAGAGGAAGGGAAGATCATGGCTGAAGGCC
AGAAAATTTTCCTTCCATCTCTTTATTTTTCCGAAAAGGGACTAGTAACCAATATTAAGCGGATTCTAAATCAAACCCAG
TATGATGAACAGTTCCCGGAGTCTGAATTTCTTTTGGCCCTTGGGAATTTGGAGGAACGTCTGGGTGTCCAATATGCCCC
AACTCAAAAGGAAGCCATTCAAACAGCTCTTATGTCTCCTATGCTAATATTGACCGGCGGGCCGGGGACAGGAAAAACAA
CCGTTATTAAGGGGATTGTTGAGTTATATGCCGAGCTGCATGGCTGCTCCCTGGAACCCAAAGATTATAAAAAGGAAGAA
CCCTTTCCCTTCCTGCTGGCAGCCCCTACAGGAAGAGCTGCAAAACGGATGGCAGAATCAACAGGGCTTCCCGCAGTAAC
AATACACCGCCTTCTTGGCTGGAATGGTTCTGAAGGATTTGACCGGCACGAGGAAAGTCCATTAGAAGGCAGGATTTTAA
TCGTAGATGAAACATCAATGGTTGATATTTGGCTGGCAAATCAGCTTTTCAAAGCACTTCCTGAAAATATGCAGGTGATC
CTGGTTGGTGATGAAGACCAGCTGCCATCAGTGGGTCCCGGCCAGGTTTTGAAGGATCTTTTGCGCTCAGAACGCATTCC
AACAGTCCGTTTAACAGATATATACAGGCAGGCTGAAGGATCCTCAATTATTGAACTGGCACATGAAATGAAAAAAGGCA
AGCTTCCTGCGAACATCTCTGCACAGCAATCTGATCGTTCATTTATCAAATGCCAGCCGGGCCAAATTGCTGATGTTGTT
GAAAAAGTTGTCCTGAATGCCAAAAAGAAAGGTTATTCTTCTAAAGATATTCAGGTGCTTGCCCCAATGTACCGCGGACC
TGCAGGCATCGACAGACTAAACGAAATACTGCAGGAAATACTGAATCCAAATCCCGATGGGTCGAGGAAAGAGCTGTCCT
TTGGTGATGTGAAATACAGAATTGGCGATAAGGTCCTTCAGCTTGTCAACCAGCCTGAGAACAATGTTTTTAACGGGGAT
ATGGGTGAAATTGTTTCTATTTTTTTCGCAAAGGAAAATACGGAAAAACAGGATATGATTGTTGTAACCTTTGATGGGGC
GGAAGCTACATACACAAAGCAGGATCTAAACCAGATCACTCATGCCTACTGCTGCTCTGTCCATAAATCCCAGGGAAGTG
AATTTCCGATCGTCATTATGCCTGTTGTTAAAAGCTATTACAGGATGCTTAGAAGAAATCTCCTTTATACTGCCATTACC
CGCAGCAGACAATTTTTGATATTGTGCGGTGAAGAAGATGCATTGAAAATCGGTGTGGAACGTGCGGATGAACAGGCCCG
CCTGACCACTCTTTCTGAAAAGCTGAGAGATGCAATCCTGTTTAATGATGAAACAGAGCTTGAAGATACAGCTGAGTCTT
CTCTTACGGAAACACTTTCTCTCGAAGAAAAGCTTCTTCAAGCCGATCCAATGATAGGAATGGGAAATATAACACCGTAT
GATTTTTTGGAAAAAGAATATAGCTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-664)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

AAA domain (AAA_30)

(345-552)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.857

98.639

0.61