Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   LLY41_RS06085 Genome accession   NZ_CP086235
Coordinates   1219035..1221404 (+) Length   789 a.a.
NCBI ID   WP_304587169.1    Uniprot ID   -
Organism   Cytobacillus firmus strain T8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1214035..1226404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLY41_RS06065 (LLY41_06075) - 1214626..1214922 (+) 297 WP_095245951.1 post-transcriptional regulator -
  LLY41_RS06070 (LLY41_06080) secDF 1215233..1217496 (+) 2264 Protein_1158 protein translocase subunit SecDF -
  LLY41_RS06075 (LLY41_06085) - 1217630..1218532 (+) 903 WP_095245949.1 cation diffusion facilitator family transporter -
  LLY41_RS06080 (LLY41_06090) - 1218557..1218874 (+) 318 WP_095245948.1 lipopolysaccharide assembly LapA domain-containing protein -
  LLY41_RS06085 (LLY41_06095) recJ 1219035..1221404 (+) 2370 WP_304587169.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  LLY41_RS06090 (LLY41_06100) - 1221395..1221907 (+) 513 WP_095245946.1 adenine phosphoribosyltransferase -
  LLY41_RS06095 (LLY41_06105) - 1222414..1224608 (+) 2195 Protein_1163 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  LLY41_RS06100 (LLY41_06110) dtd 1224623..1225063 (+) 441 WP_304587171.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 789 a.a.        Molecular weight: 88104.38 Da        Isoelectric Point: 5.0550

>NTDB_id=623895 LLY41_RS06085 WP_304587169.1 1219035..1221404(+) (recJ) [Cytobacillus firmus strain T8]
MLHSRTRWIVRQTEDDKVQRLSKELNISPLAASLLINRGMDTVDSARYFLMDNEQEFHDPFLMTDMAIAVSRIKEAIEKQ
EPILIFGDYDADGVTSTSVMMMALRDLGADVQFYIPNRFTEGYGPNVPAFEHAAEIGIRLIITVDTGISAVNEAKAAKEL
GMDLIITDHHEPGPELPEALAIVHPKHPESRYPFRELAGVGVAFKLAHALYGEMPEHLLEIAAIGTIADLVSLTGENRLI
AKRGIQKLKSTKNTGLNALFKAARIELPSISEETIGFTIGPRLNAAGRLESADPAVDLLLTNDSYEAQAIAEEIEMLNKE
RQAIVNDIAGQAISEVETNFPISENSVIVVGKEGWNAGVIGIVASKLVEKFYRPAIVLSYDNEKGLAKGSARSIEGFDLF
KNLSECRDILPHFGGHPMAAGMTLSIDSVDELRSRLNTLANEQLSEEDFIPVTSIDGVFHLKDINLSSIAEMQLLAPFGM
GNAKPKVMIKDANISAMRKIGSEQNHIKVTIENDGSSLDGIGFGLGHLHEHISPYSKLSVIGELSINEWNNIKKPQIFLQ
DMAVNSWQLFDIRSLKRLERLQSVIPETNTTWVFFNDEYISKYKTFAGENMVKITSAEDAETIKIEGSNVVLADLPPSKE
ILAQVFSGKKPARVYAHFYKEDSDFFSTIPTRDHFKWYFALIAKKGSIDIRRHGNDIAKHKGWSRETVDFMSQVFFELEF
VKINNGVISLNNTSTKRDLADSRTYQLKQAQYTLESDLLYSSFQQLKDWFDEVMQGAVKLEEAKEEKWT

Nucleotide


Download         Length: 2370 bp        

>NTDB_id=623895 LLY41_RS06085 WP_304587169.1 1219035..1221404(+) (recJ) [Cytobacillus firmus strain T8]
ATGTTACATTCAAGAACGCGGTGGATTGTTCGGCAAACAGAGGACGATAAAGTACAGCGGCTTTCAAAGGAACTGAATAT
TTCTCCTCTTGCAGCATCGCTGTTAATTAATCGCGGAATGGATACCGTTGATTCAGCGCGGTATTTTCTGATGGATAATG
AGCAGGAATTTCATGATCCTTTTTTAATGACAGATATGGCAATTGCTGTTTCCAGAATAAAAGAAGCTATTGAAAAACAG
GAACCTATTTTAATTTTTGGTGATTATGATGCGGATGGTGTGACAAGCACTTCTGTCATGATGATGGCACTTAGAGATCT
CGGTGCTGATGTCCAATTCTACATACCGAATCGTTTTACGGAAGGCTATGGGCCAAATGTCCCGGCTTTTGAACATGCAG
CTGAAATCGGCATCCGTTTAATTATTACTGTAGATACTGGAATCTCTGCTGTAAATGAAGCAAAAGCTGCAAAAGAGCTG
GGAATGGATTTGATCATTACAGATCACCATGAGCCCGGCCCTGAGCTTCCTGAAGCATTGGCCATTGTGCATCCTAAGCA
TCCGGAGAGCAGATACCCATTCCGGGAACTTGCCGGTGTTGGGGTAGCCTTTAAGCTTGCACATGCGCTTTATGGTGAAA
TGCCTGAACACCTTTTGGAAATAGCTGCGATCGGCACAATTGCTGACCTGGTTTCCTTAACGGGAGAAAACAGACTTATT
GCCAAGCGCGGAATTCAAAAGCTGAAATCAACTAAAAATACAGGCTTGAATGCCTTGTTTAAAGCGGCACGAATCGAGCT
TCCATCCATTAGTGAAGAAACGATCGGCTTTACAATCGGCCCTCGCCTCAATGCAGCCGGAAGGCTTGAGAGCGCTGATC
CTGCTGTGGATCTGCTTCTGACAAATGATTCTTATGAAGCACAAGCCATTGCCGAAGAAATTGAAATGCTGAATAAAGAG
AGGCAAGCTATTGTCAATGACATTGCAGGACAAGCGATTTCAGAGGTTGAAACAAATTTCCCAATCAGTGAGAATTCAGT
TATTGTTGTCGGGAAAGAAGGCTGGAACGCCGGGGTAATCGGAATTGTAGCTTCGAAACTTGTTGAAAAGTTTTACCGGC
CGGCAATTGTTCTTAGCTATGACAATGAAAAAGGGCTTGCGAAGGGTTCAGCAAGAAGTATAGAAGGATTTGATCTGTTC
AAAAATCTTTCTGAATGCAGGGATATCCTGCCCCACTTTGGAGGGCACCCGATGGCAGCAGGAATGACTTTATCCATTGA
TTCGGTTGATGAACTGAGAAGCAGACTGAATACTCTTGCAAATGAACAGCTGTCTGAGGAAGATTTTATTCCTGTAACTT
CTATTGATGGGGTTTTCCATTTAAAAGATATCAATCTTTCTTCTATTGCAGAGATGCAGCTGCTTGCTCCATTTGGGATG
GGAAATGCAAAACCAAAAGTAATGATAAAAGATGCTAATATTTCAGCTATGAGAAAGATCGGATCTGAACAAAACCATAT
TAAAGTCACAATCGAGAATGATGGATCTTCACTCGATGGCATCGGTTTTGGGCTTGGGCATTTGCATGAGCATATTTCAC
CATACTCCAAGCTGTCAGTTATCGGTGAATTATCCATTAATGAATGGAATAACATTAAAAAGCCGCAAATTTTCCTGCAG
GATATGGCGGTAAACTCGTGGCAGCTGTTTGATATCCGGAGTTTAAAACGGCTTGAAAGACTTCAAAGTGTCATTCCTGA
GACAAACACAACCTGGGTATTTTTTAATGATGAATATATTTCCAAATATAAGACATTTGCAGGGGAAAACATGGTGAAAA
TAACATCTGCAGAAGACGCTGAAACCATAAAAATAGAAGGTTCAAATGTAGTACTGGCTGACTTGCCGCCTTCAAAGGAA
ATTCTTGCACAGGTTTTCTCAGGGAAAAAACCTGCCAGAGTTTATGCTCATTTCTATAAAGAAGACAGTGACTTTTTCAG
CACAATACCAACAAGAGACCACTTTAAATGGTATTTTGCCCTGATTGCTAAAAAAGGCTCAATTGATATCAGGCGTCATG
GGAATGATATAGCCAAGCATAAGGGATGGAGCAGGGAGACGGTAGATTTTATGTCTCAAGTGTTTTTTGAATTGGAATTT
GTTAAAATTAATAATGGTGTCATTTCGTTAAACAATACATCTACTAAACGTGATTTAGCTGATTCACGAACTTATCAGCT
TAAACAGGCACAATACACTCTTGAGAGCGATTTGCTCTATTCATCCTTTCAGCAGCTCAAAGACTGGTTTGATGAAGTTA
TGCAAGGGGCTGTAAAACTTGAGGAGGCAAAGGAAGAAAAATGGACTTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(83-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-770)

DHHA1 domain (DHHA1)

(317-438)

RecJ OB domain (RecJ_OB)

(455-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

55.026

98.352

0.541