Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   FNP71_RS15060 Genome accession   NZ_AP019714
Coordinates   2807637..2808902 (+) Length   421 a.a.
NCBI ID   WP_004398500.1    Uniprot ID   O34528
Organism   Bacillus subtilis subsp. subtilis strain NBRC 13719     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2802637..2813902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNP71_RS15040 (NBRC13719_28420) yrrB 2804008..2804628 (-) 621 WP_010886584.1 tetratricopeptide repeat protein -
  FNP71_RS15045 (NBRC13719_28430) mnmA 2804714..2805829 (-) 1116 WP_004398509.1 tRNA 2-thiouridine(34) synthase MnmA -
  FNP71_RS15050 (NBRC13719_28440) iscSA 2805860..2806999 (-) 1140 WP_003246057.1 cysteine desulfurase family protein -
  FNP71_RS15055 (NBRC13719_28450) cymR 2807018..2807434 (-) 417 WP_003225879.1 cysteine metabolism transcriptional regulator CymR -
  FNP71_RS15060 (NBRC13719_28460) rarA 2807637..2808902 (+) 1266 WP_004398500.1 replication-associated recombination protein A Machinery gene
  FNP71_RS15065 (NBRC13719_28470) tcdA 2808944..2809708 (-) 765 WP_009967893.1 tRNA threonylcarbamoyladenosine dehydratase -
  FNP71_RS15075 (NBRC13719_28480) aspS 2810044..2811822 (-) 1779 WP_003229758.1 aspartate--tRNA ligase -
  FNP71_RS15080 (NBRC13719_28490) hisS 2811836..2813110 (-) 1275 WP_003229755.1 histidine--tRNA ligase -
  FNP71_RS15085 (NBRC13719_28500) yrzK 2813492..2813662 (-) 171 WP_004399157.1 YrzK family protein -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46514.38 Da        Isoelectric Point: 7.2043

>NTDB_id=62386 FNP71_RS15060 WP_004398500.1 2807637..2808902(+) (rarA) [Bacillus subtilis subsp. subtilis strain NBRC 13719]
MKPLAYRMRPTKIEDIIGQQHLVAEDKIIGRMVQAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVINNKKDME
IVAQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPELIKQALER
ALHDEHRGLGTYSVSIDDQAMEHFAHGCGGDVRSALNALELAVLSTKESADGEIHITLETAEECLQKKSFSHDKDGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESIARRLLVIAYEDIGLASPQAGPRVLNAIQTAERVGFPEARIPLANAV
IELCLSPKSNSAILAIDEALADIRAGKIGDVPKHLKDAHYKGAQELGRGIDYKYPHNYDNGWVEQQYLPDPLKNKQYYKP
KQTGKFESALKQVYDKLMKRK

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=62386 FNP71_RS15060 WP_004398500.1 2807637..2808902(+) (rarA) [Bacillus subtilis subsp. subtilis strain NBRC 13719]
ATGAAGCCATTGGCATATCGGATGCGTCCGACAAAAATAGAGGATATTATCGGCCAGCAGCATCTGGTGGCTGAAGATAA
AATTATTGGCAGAATGGTCCAGGCAAAACATTTGTCATCCATGATTTTGTACGGGCCGCCCGGAATTGGAAAAACATCAA
TCGCAACAGCAATCGCCGGTTCAACAAGTATTGCTTTTCGAAAGCTGAATGCTGTCATTAACAATAAAAAAGATATGGAA
ATCGTAGCTCAGGAAGCCAAGATGTCCGGCCAAGTGATTTTGATTCTGGATGAAGTCCACAGGCTGGATAAAGGAAAACA
GGATTTTCTATTACCCTATTTAGAAAACGGAATGATCATTTTGATCGGAGCAACGACGGCTAACCCGTATCATGCCATTA
ATCCGGCGATCAGAAGCCGGACCCAGATTTTTGAGCTTGAACCGTTAACACCTGAACTGATTAAACAGGCACTGGAACGT
GCGCTCCATGATGAGCATCGGGGCCTTGGCACCTATTCTGTATCCATTGATGATCAGGCGATGGAGCATTTTGCCCACGG
ATGCGGAGGAGATGTCCGCTCCGCTTTAAATGCGCTTGAGCTTGCCGTGTTGTCAACGAAGGAGTCAGCAGACGGTGAAA
TTCACATTACATTAGAAACCGCGGAAGAATGCTTGCAGAAAAAAAGCTTTTCTCACGATAAAGATGGTGACGCGCATTAT
GATGTACTGTCCGCTTTTCAAAAATCAATCCGCGGCTCTGATGCCAACGCTGCTCTTCACTATTTGGCTAGATTAATTGA
AGCCGGTGATCTGGAGAGCATCGCAAGACGATTGCTTGTTATCGCCTATGAGGATATCGGTTTAGCAAGCCCGCAAGCCG
GCCCTAGAGTGCTGAACGCTATTCAGACCGCTGAGCGAGTCGGGTTTCCTGAAGCGCGAATCCCGCTGGCCAACGCAGTT
ATTGAGCTTTGCCTCTCACCGAAATCAAACTCTGCCATTCTGGCAATCGATGAGGCCCTGGCAGATATCAGAGCCGGAAA
AATTGGGGATGTCCCGAAGCATTTAAAAGACGCGCATTATAAAGGAGCTCAGGAATTAGGAAGAGGAATCGACTATAAAT
ACCCGCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCG
AAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(172-251)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(8-125)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-417)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O34528

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment