Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LL975_RS05145 Genome accession   NZ_CP086198
Coordinates   992452..994845 (+) Length   797 a.a.
NCBI ID   WP_254254572.1    Uniprot ID   -
Organism   Macrococcoides canis strain KW0150     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 987452..999845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL975_RS05120 (LL975_05105) cymR 987727..988149 (+) 423 WP_086042810.1 cysteine metabolism transcriptional regulator CymR -
  LL975_RS05125 (LL975_05110) - 988267..989262 (-) 996 WP_254254576.1 LLM class flavin-dependent oxidoreductase -
  LL975_RS05130 (LL975_05115) - 989435..990562 (+) 1128 WP_254254575.1 cysteine desulfurase family protein -
  LL975_RS05135 (LL975_05120) mnmA 990574..991689 (+) 1116 WP_254254574.1 tRNA 2-thiouridine(34) synthase MnmA -
  LL975_RS05140 (LL975_05125) - 991790..992449 (+) 660 WP_254254573.1 tetratricopeptide repeat protein -
  LL975_RS05145 (LL975_05130) recD2 992452..994845 (+) 2394 WP_254254572.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LL975_RS05150 (LL975_05135) alaS 995096..997720 (+) 2625 WP_254254571.1 alanine--tRNA ligase -
  LL975_RS05155 (LL975_05140) - 997800..998045 (+) 246 WP_226997688.1 IreB family regulatory phosphoprotein -
  LL975_RS05160 (LL975_05145) ruvX 998038..998457 (+) 420 WP_086042803.1 Holliday junction resolvase RuvX -
  LL975_RS05165 (LL975_05150) - 998473..998784 (+) 312 WP_099482913.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 797 a.a.        Molecular weight: 90194.42 Da        Isoelectric Point: 4.5065

>NTDB_id=623597 LL975_RS05145 WP_254254572.1 992452..994845(+) (recD2) [Macrococcoides canis strain KW0150]
MENMTLFEQSFVKGTITRILFYNNDNFYTVLKAEVIESNEDFDDDATITGYLPQIAEGDTYTFTGKIVTHPKYGKQLQAD
KFEKDMPQSRDGIIHYLSSDLFKGVGKKTARTIVEVLGEDALNIILDDKSSLDRVPKLSDEKKDLIFNTIHDNQAIEKIM
IRLNEFGFGPQLAMKIYQFYKDDTLKVINESPYQLVMDIEGIGFNKADELAGKLGIDNNHPERLKAALVFTIEQASNQNG
HTYIPDQVLLETSFNLLTKNGSQVDPDRLVIALTELTEENKLVEHEKNIYIPSLFYSETKAVQILHRLMNHKDQVKQFEQ
SEVLLAIGELESLFEVSYAERQKDALVTAMNSKLMILTGGPGTGKTTVVRGIVNLYAELHGFSLDYDDYDGQDYPIVVAA
PTGRASKRLQESTGLEATTIHRLIGWTRENKPDDVLETEITAKLVIIDEMSMVDTWLMFQLMKAVPNDAQIIFVGDQDQL
PSVGPGQVFKDMIDAQIMPQIELNEVYRQQEGSSIVELAHQIKRNEPFDITKRYNDRSFIPCSSSQIPEVIEKIVRSAVN
KGYDMRDIQVLAPIYRGPAGIRALNKVLQEILNPSDENKRELQFGDVYFRTGDKVLQLVNRPEDNVFNGDIGEVTGIFMA
AENALNKDVVIVDYDGSEVTYTKADLMEVTHAYCCSIHKSQGSEFPIVIMPVVNQYFRMLQKNILYTGLTRAKQSLIFCG
DVQAFNEGIKRIGNARFTSFYQFLIDYFKTDEADDTKLDNAGDNVLPFNVGEMTEDNMHLVDPMINMEGITPYDFIS

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=623597 LL975_RS05145 WP_254254572.1 992452..994845(+) (recD2) [Macrococcoides canis strain KW0150]
TTGGAAAATATGACTTTGTTTGAGCAATCCTTTGTAAAAGGAACAATAACGAGAATATTATTCTATAACAATGATAATTT
CTATACTGTGCTGAAGGCAGAAGTGATTGAATCAAACGAAGATTTCGATGATGATGCTACGATTACAGGGTACCTTCCGC
AAATTGCAGAAGGGGATACATACACGTTCACAGGTAAGATTGTAACGCATCCGAAGTACGGAAAGCAGTTACAGGCAGAT
AAGTTTGAGAAGGATATGCCGCAGTCACGTGACGGTATTATTCATTATTTATCGAGTGATCTGTTTAAAGGGGTCGGTAA
GAAAACAGCGAGAACAATCGTTGAAGTCCTGGGTGAAGATGCGCTAAATATTATTCTCGATGATAAAAGTAGTCTTGACA
GAGTCCCGAAGTTATCAGACGAGAAAAAAGATCTAATTTTTAATACGATACACGACAATCAGGCAATCGAGAAGATTATG
ATTCGTCTGAATGAATTTGGATTCGGTCCACAGCTTGCAATGAAGATCTATCAGTTCTATAAGGATGATACGCTGAAGGT
GATTAATGAATCCCCATATCAACTCGTGATGGATATTGAAGGTATCGGATTTAATAAGGCGGATGAACTGGCAGGGAAAC
TCGGTATCGATAACAATCACCCCGAACGTCTGAAAGCAGCGCTCGTGTTTACGATAGAGCAAGCCTCTAATCAGAATGGT
CATACATATATTCCGGACCAGGTGCTACTTGAAACGAGCTTCAATCTACTGACGAAAAATGGCAGTCAAGTCGATCCAGA
CCGTCTCGTTATCGCACTCACTGAACTCACAGAGGAAAATAAGCTCGTTGAACATGAGAAGAACATCTATATCCCGAGTC
TATTCTATTCTGAAACGAAAGCTGTACAAATATTGCATCGATTAATGAATCATAAGGATCAGGTGAAACAGTTCGAACAG
TCTGAAGTATTGCTGGCAATCGGGGAACTGGAGTCACTGTTCGAAGTGAGTTATGCAGAACGACAGAAAGATGCGCTTGT
AACGGCGATGAACAGTAAACTGATGATCTTAACGGGGGGACCAGGTACAGGAAAGACGACGGTTGTGCGCGGTATTGTGA
ATTTGTATGCTGAACTGCATGGGTTTAGTCTAGATTATGATGACTATGATGGACAGGACTATCCGATTGTTGTCGCAGCA
CCCACTGGTCGTGCATCGAAACGTCTTCAGGAGTCAACAGGCCTTGAAGCGACGACAATACACAGGTTAATTGGCTGGAC
GAGAGAGAATAAACCCGATGATGTACTGGAAACGGAAATTACAGCGAAGCTTGTCATTATCGATGAAATGTCGATGGTTG
ATACGTGGCTCATGTTTCAGTTGATGAAAGCTGTGCCGAATGATGCACAGATTATCTTTGTCGGTGACCAGGACCAGCTG
CCATCCGTTGGACCAGGGCAAGTGTTCAAAGACATGATAGATGCACAAATTATGCCGCAGATTGAGCTGAATGAAGTGTA
CAGGCAGCAGGAAGGTTCATCAATCGTTGAACTTGCGCACCAAATTAAGCGTAATGAACCATTTGATATTACGAAACGTT
ATAATGACAGAAGCTTTATACCGTGCTCAAGCAGTCAAATACCAGAAGTGATCGAGAAGATCGTGCGCAGTGCTGTGAAT
AAAGGGTATGACATGCGTGATATACAAGTACTCGCACCGATATATAGAGGGCCAGCGGGTATACGTGCGCTGAACAAAGT
ACTGCAGGAAATATTGAATCCAAGTGATGAAAACAAGCGTGAATTACAGTTTGGTGATGTTTATTTCAGAACAGGGGACA
AAGTGCTGCAGCTTGTCAATCGACCGGAAGACAATGTGTTTAACGGCGATATTGGTGAAGTGACGGGTATCTTCATGGCG
GCAGAGAACGCACTGAATAAAGATGTTGTCATAGTGGATTATGATGGGAGTGAAGTGACGTATACGAAAGCGGATTTAAT
GGAAGTTACACATGCCTACTGCTGCTCCATTCATAAATCACAAGGTTCAGAATTTCCGATTGTCATTATGCCGGTTGTCA
ATCAATACTTCAGAATGCTGCAGAAGAATATACTCTATACCGGATTAACACGCGCGAAACAGTCACTTATTTTCTGTGGA
GATGTACAGGCGTTTAATGAAGGAATAAAGCGAATCGGTAACGCAAGATTTACAAGCTTCTATCAGTTTCTTATCGATTA
TTTTAAGACAGATGAAGCAGATGATACAAAGCTTGATAATGCAGGTGACAACGTATTACCTTTCAACGTTGGTGAGATGA
CTGAAGACAATATGCATCTCGTTGATCCGATGATCAACATGGAAGGTATAACACCCTATGATTTTATAAGTTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(671-718)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(584-653)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

AAA domain (AAA_30)

(338-543)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

51.677

100

0.522