Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   LL146_RS06405 Genome accession   NZ_CP086172
Coordinates   1259437..1259952 (-) Length   171 a.a.
NCBI ID   WP_010790657.1    Uniprot ID   -
Organism   Campylobacter jejuni strain 6-897-19     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1254437..1264952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL146_RS06390 (LL146_06390) - 1254544..1256277 (-) 1734 WP_002853967.1 flagellin A -
  LL146_RS06395 (LL146_06395) - 1256360..1258186 (-) 1827 WP_180819942.1 motility associated factor glycosyltransferase family protein -
  LL146_RS06400 (LL146_06400) - 1258196..1259437 (-) 1242 WP_002853665.1 DUF2920 family protein -
  LL146_RS06405 (LL146_06405) ctsG 1259437..1259952 (-) 516 WP_010790657.1 type II secretion system protein Machinery gene
  LL146_RS06410 (LL146_06410) tsaD 1259953..1260960 (-) 1008 WP_002875973.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  LL146_RS06415 (LL146_06415) - 1260957..1262351 (-) 1395 WP_010790658.1 M99 family carboxypeptidase catalytic domain-containing protein -
  LL146_RS06420 (LL146_06420) dxr 1262353..1263423 (-) 1071 WP_002859634.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  LL146_RS06425 (LL146_06425) cdsA 1263420..1264145 (-) 726 WP_010790659.1 phosphatidate cytidylyltransferase -
  LL146_RS06430 (LL146_06430) - 1264154..1264492 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18751.53 Da        Isoelectric Point: 5.2647

>NTDB_id=623272 LL146_RS06405 WP_010790657.1 1259437..1259952(-) (ctsG) [Campylobacter jejuni strain 6-897-19]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNDTKEVNFRVGDDKECLKLVFIDRADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=623272 LL146_RS06405 WP_010790657.1 1259437..1259952(-) (ctsG) [Campylobacter jejuni strain 6-897-19]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTCAATGACACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAGATAGAGCGGA
TTTTATACTCATGGGAATTTCAAGTAATGAAGCAAGCAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.982

100

0.93