Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   LL138_RS07420 Genome accession   NZ_CP086160
Coordinates   1464058..1464666 (-) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter jejuni strain SHI5328     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1459058..1469666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL138_RS07395 (LL138_07395) - 1459215..1459979 (+) 765 WP_002851318.1 TIGR02757 family protein -
  LL138_RS07400 (LL138_07400) - 1459983..1460747 (+) 765 WP_002855821.1 TSUP family transporter -
  LL138_RS07405 (LL138_07405) ctsF 1460740..1461921 (-) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  LL138_RS07410 (LL138_07410) ctsE 1461918..1463477 (-) 1560 WP_032600597.1 GspE/PulE family protein Machinery gene
  LL138_RS07415 (LL138_07415) ctsX 1463467..1464054 (-) 588 WP_002851370.1 membrane protein Machinery gene
  LL138_RS07420 (LL138_07420) ctsP 1464058..1464666 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  LL138_RS07425 (LL138_07425) ctsD 1464659..1466071 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  LL138_RS07430 (LL138_07430) ctsR 1466049..1466360 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=622982 LL138_RS07420 WP_002851464.1 1464058..1464666(-) (ctsP) [Campylobacter jejuni strain SHI5328]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=622982 LL138_RS07420 WP_002851464.1 1464058..1464666(-) (ctsP) [Campylobacter jejuni strain SHI5328]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTACGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTCGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995