Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   LL138_RS06800 Genome accession   NZ_CP086160
Coordinates   1331673..1332188 (-) Length   171 a.a.
NCBI ID   WP_002879014.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SHI5328     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1326673..1337188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL138_RS06785 (LL138_06785) - 1326782..1328599 (-) 1818 WP_227944499.1 motility associated factor glycosyltransferase family protein -
  LL138_RS06790 (LL138_06790) - 1328596..1330419 (-) 1824 WP_126655092.1 motility associated factor glycosyltransferase family protein -
  LL138_RS06795 (LL138_06795) - 1330429..1331673 (-) 1245 WP_227944500.1 DUF2920 family protein -
  LL138_RS06800 (LL138_06800) ctsG 1331673..1332188 (-) 516 WP_002879014.1 type II secretion system protein Machinery gene
  LL138_RS06805 (LL138_06805) tsaD 1332189..1333196 (-) 1008 WP_002886115.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  LL138_RS06810 (LL138_06810) - 1333193..1334587 (-) 1395 WP_002909663.1 M99 family carboxypeptidase catalytic domain-containing protein -
  LL138_RS06815 (LL138_06815) dxr 1334589..1335659 (-) 1071 WP_002860792.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  LL138_RS06820 (LL138_06820) cdsA 1335656..1336381 (-) 726 WP_227944501.1 phosphatidate cytidylyltransferase -
  LL138_RS06825 (LL138_06825) - 1336390..1336728 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18742.65 Da        Isoelectric Point: 7.2441

>NTDB_id=622975 LL138_RS06800 WP_002879014.1 1331673..1332188(-) (ctsG) [Campylobacter jejuni strain SHI5328]
MRKAFTILELVFVIVILGILAAIALPKMSSSKHEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGIENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=622975 LL138_RS06800 WP_002879014.1 1331673..1332188(-) (ctsG) [Campylobacter jejuni strain SHI5328]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATTGTTATCTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGTAAGCATGAAGCCGAGGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAACGATATAAGCATTT
ATACTTTGAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGATTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.737

100

0.947