Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   LL147_RS07340 Genome accession   NZ_CP086159
Coordinates   1439439..1440047 (-) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter jejuni strain SHI6972     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1434439..1445047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL147_RS07315 (LL147_07315) - 1434597..1435359 (+) 763 Protein_1420 TIGR02757 family protein -
  LL147_RS07320 (LL147_07320) - 1435363..1436127 (+) 765 WP_002855301.1 TSUP family transporter -
  LL147_RS07325 (LL147_07325) ctsF 1436124..1437302 (-) 1179 WP_002855409.1 type II secretion system F family protein Machinery gene
  LL147_RS07330 (LL147_07330) ctsE 1437299..1438858 (-) 1560 WP_013463615.1 GspE/PulE family protein Machinery gene
  LL147_RS07335 (LL147_07335) ctsX 1438848..1439435 (-) 588 WP_002851370.1 membrane protein Machinery gene
  LL147_RS07340 (LL147_07340) ctsP 1439439..1440047 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  LL147_RS07345 (LL147_07345) ctsD 1440040..1441452 (-) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  LL147_RS07350 (LL147_07350) ctsR 1441430..1441741 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=622955 LL147_RS07340 WP_002851464.1 1439439..1440047(-) (ctsP) [Campylobacter jejuni strain SHI6972]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=622955 LL147_RS07340 WP_002851464.1 1439439..1440047(-) (ctsP) [Campylobacter jejuni strain SHI6972]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTTGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995