Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   KW2_RS10285 Genome accession   NC_022369
Coordinates   2144481..2145419 (-) Length   312 a.a.
NCBI ID   WP_021037893.1    Uniprot ID   -
Organism   Lactococcus cremoris subsp. cremoris KW2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2139481..2150419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KW2_RS10260 (kw2_2064) frr 2139659..2140216 (-) 558 WP_011677081.1 ribosome recycling factor -
  KW2_RS10265 (kw2_2065) pyrH 2140373..2141089 (-) 717 WP_004254608.1 UMP kinase -
  KW2_RS10270 (kw2_2066) - 2141174..2141626 (-) 453 WP_021037891.1 hypothetical protein -
  KW2_RS10275 (kw2_2067) - 2141756..2142943 (-) 1188 WP_021037892.1 acetate kinase -
  KW2_RS10280 (kw2_2068) - 2143102..2144289 (-) 1188 WP_011835968.1 acetate kinase -
  KW2_RS10285 (kw2_2069) comYH 2144481..2145419 (-) 939 WP_021037893.1 class I SAM-dependent methyltransferase Machinery gene
  KW2_RS10290 (kw2_2070) - 2145507..2145683 (-) 177 WP_014573259.1 hypothetical protein -
  KW2_RS10295 (kw2_2071) typA 2145859..2147691 (-) 1833 WP_041168744.1 translational GTPase TypA -
  KW2_RS12370 (kw2_2072) - 2147868..2148341 (-) 474 WP_021037895.1 hypothetical protein -
  KW2_RS10305 (kw2_2073) - 2148370..2148774 (-) 405 WP_021037896.1 hypothetical protein -
  KW2_RS12295 (kw2_2074) - 2148783..2149580 (-) 798 WP_021037897.1 hypothetical protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34596.63 Da        Isoelectric Point: 4.4888

>NTDB_id=62280 KW2_RS10285 WP_021037893.1 2144481..2145419(-) (comYH) [Lactococcus cremoris subsp. cremoris KW2]
MNMEKVAQGFELVVENITKLSGKLDTDFYDAFVEQNAAFLDGTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQANHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
HAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVAATDGHTFAHHLLIEQSFNYLKDGAFAVFLAPEDLLTSV
QGPLLKEWISKHGSIMAVITLPSSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEIFMEEFTKTVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=62280 KW2_RS10285 WP_021037893.1 2144481..2145419(-) (comYH) [Lactococcus cremoris subsp. cremoris KW2]
ATGAACATGGAGAAAGTGGCTCAAGGTTTTGAGCTGGTAGTTGAAAATATTACAAAATTATCTGGGAAATTAGATACAGA
TTTTTATGATGCTTTTGTGGAACAAAATGCTGCTTTTTTAGATGGTACTGACCAAGGAATTGTTGAGCTGTCAGTAAATA
ATGACAAACTCCGTCAGTTAAATTTATCAAATAAAGAATGGCAAAAACTTTTTCAATTTGTTTTATTAAAAGGTTCGCAA
GTTGCGCCTCTTCAGGCCAATCATGCCATGACTCCTGATGCAATTGGTCTAATTTTCAACTTTATCATTGAACATCTCAA
TAAAAATTCTGAACTTCGCTTAATTGAGTTTGGTTCTGGTATGGGTAATCTTGCGGAAACATTGCTTGTTAATCTTAATA
AAAAAGTAGATTATGTTGGTTTTGAAGTCGATGATTTACTTTTAGATTTGTCAGCTTCAATGGCTGAAATCATGGGAAGC
CATGCCGAATTTATGCAAATTGATGCGGTTCAAAAACGGTTGATGGAGCCAGCTGATGTTGTTGTTAGTGATTTGCCAAT
CGGTTTTTATCCAGATGATGAAGTTGCGAAAAATTTTGAAGTCGCTGCTACTGATGGACACACCTTTGCACATCATTTGT
TGATTGAACAATCATTTAATTACTTGAAAGATGGTGCATTTGCAGTTTTCTTAGCACCAGAGGATTTACTGACAAGTGTA
CAAGGCCCACTTTTAAAAGAATGGATTAGTAAGCATGGAAGTATTATGGCGGTAATTACTTTACCAAGCTCACTTTTTAA
TGCTGATGCTAAAGCAATTTATGTCTTGAAAAAAGGACCTGCTGCTCATGCGACCTTTGCTCATCCTTTGTCATCATTGA
CAGACAGAGAAAGTTTAGAAATCTTTATGGAAGAATTTACAAAAACTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

49.201

100

0.494
  comYH Streptococcus mutans UA159

48.882

100

0.49

Multiple sequence alignment