Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LLZ90_RS06515 Genome accession   NZ_CP086129
Coordinates   1280769..1282523 (-) Length   584 a.a.
NCBI ID   WP_234528162.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain MIN-181     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1275769..1287523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLZ90_RS06490 (LLZ90_06495) mvaD 1276198..1277142 (-) 945 WP_000348826.1 diphosphomevalonate decarboxylase -
  LLZ90_RS06495 (LLZ90_06500) mvk 1277124..1278002 (-) 879 WP_000659719.1 mevalonate kinase -
  LLZ90_RS06500 (LLZ90_06505) - 1278118..1279347 (-) 1230 WP_000489521.1 HAMP domain-containing sensor histidine kinase -
  LLZ90_RS06505 (LLZ90_06510) - 1279347..1280033 (-) 687 WP_001264422.1 response regulator transcription factor -
  LLZ90_RS06510 (LLZ90_06515) - 1280035..1280661 (-) 627 WP_000449636.1 GTP pyrophosphokinase family protein -
  LLZ90_RS06515 (LLZ90_06520) rcrQ 1280769..1282523 (-) 1755 WP_234528162.1 ABC transporter ATP-binding protein Regulator
  LLZ90_RS06520 (LLZ90_06525) rcrP 1282513..1284330 (-) 1818 WP_000481819.1 ABC transporter ATP-binding protein Regulator
  LLZ90_RS06525 (LLZ90_06530) - 1284377..1284817 (-) 441 WP_000431168.1 MarR family winged helix-turn-helix transcriptional regulator -
  LLZ90_RS06530 (LLZ90_06535) - 1285086..1287158 (+) 2073 WP_000726930.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 584 a.a.        Molecular weight: 64525.84 Da        Isoelectric Point: 7.1904

>NTDB_id=622773 LLZ90_RS06515 WP_234528162.1 1280769..1282523(-) (rcrQ) [Streptococcus agalactiae strain MIN-181]
MKTKSQKTSFFSNLSPYLKGYKLLFALAIVLATLSSLTTVIGPDRLKEMTDLMVKGLAGNIDLAKIGHIAGQLAVLYVLG
ALVSYLASFIVTTIIQKFAQGMRNAIADKINKIPLSYFDSHTQGDTLSRVTNDVDLMTQSFNQSLVTMVASTVLLIGSLI
MMFKTDWHLATTAIISVFSGFALSSIIMVKSQPLFQKQQMNLANISGYVEEIYSGHNIVTSHNARQQAKSDFQLLNDKLH
SSMWKSQFFSGIMMPLMQFIGNFGYVMVCVVGAMLAIKGTITMGTIVAFMTYVRIFTQPIGQIAQGITQLQSASAAMGRV
FEFLNETNMQEDKHKVLNLPKFKGYVSFEHVKFGYSDNKTIIHDFTSEAQPGQKVAIVGPTGAGKTTIVNLLMRFYDVNS
GSISIDDINIQDMKRSQVHDAFSMVLQDIWLFEGTIKENLIFNQTTISDDEVQEAAKAVGVHHFIMTLPKGYDTVLDDAV
TLSVGQKQLLTIARALLKNSPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIKNADLILVMKDGNIIEQ
GSHDVLMSQSGFYADLYNSQFESA

Nucleotide


Download         Length: 1755 bp        

>NTDB_id=622773 LLZ90_RS06515 WP_234528162.1 1280769..1282523(-) (rcrQ) [Streptococcus agalactiae strain MIN-181]
ATGAAAACTAAATCACAAAAAACGTCTTTTTTCTCTAATTTGTCTCCGTACCTCAAAGGTTACAAACTTCTTTTTGCGTT
AGCAATTGTGTTAGCAACTTTATCAAGCTTGACAACAGTTATAGGACCAGACCGTCTTAAAGAGATGACGGATCTTATGG
TAAAAGGCTTGGCTGGTAATATTGACTTAGCCAAAATCGGTCATATTGCAGGGCAATTGGCAGTATTATATGTTTTAGGT
GCATTAGTATCCTATCTAGCAAGTTTTATTGTAACGACTATTATTCAAAAATTTGCTCAAGGCATGCGCAATGCTATTGC
TGATAAAATCAATAAAATACCTTTGAGTTATTTTGATAGCCATACTCAAGGTGATACTTTATCTCGTGTTACAAATGATG
TGGATTTGATGACACAGTCTTTTAACCAAAGTTTAGTTACTATGGTTGCATCTACAGTATTATTGATTGGTTCATTAATT
ATGATGTTCAAAACAGATTGGCATTTAGCAACAACGGCGATTATATCGGTATTTTCAGGATTCGCTCTTTCTTCAATCAT
TATGGTGAAGAGTCAGCCTTTATTTCAAAAGCAACAGATGAATTTGGCTAATATATCTGGATATGTAGAAGAAATTTACT
CAGGACATAACATTGTTACTAGTCATAACGCAAGACAGCAGGCTAAGTCAGATTTTCAACTATTAAATGATAAACTTCAC
AGTTCCATGTGGAAATCACAATTTTTCTCTGGAATTATGATGCCTCTGATGCAGTTTATTGGTAATTTTGGTTATGTGAT
GGTGTGTGTGGTTGGTGCCATGTTAGCTATCAAAGGAACAATTACTATGGGTACAATTGTTGCTTTTATGACCTATGTTC
GTATTTTTACACAGCCTATTGGTCAGATTGCTCAAGGAATTACACAATTACAGTCTGCTAGTGCAGCCATGGGACGTGTT
TTTGAATTTTTAAATGAAACAAATATGCAAGAGGATAAGCACAAAGTGTTAAATCTTCCTAAGTTTAAGGGGTATGTGTC
CTTTGAACATGTCAAGTTTGGTTATAGTGATAACAAGACTATTATTCATGACTTTACTTCGGAGGCACAGCCTGGTCAGA
AAGTTGCTATTGTAGGACCAACTGGCGCAGGTAAAACGACAATTGTTAATTTATTGATGCGTTTTTATGATGTTAATTCA
GGTAGTATTTCCATAGATGACATCAATATCCAAGACATGAAACGTAGTCAAGTTCATGATGCTTTCTCGATGGTTCTTCA
AGATATATGGTTGTTTGAGGGAACTATTAAAGAAAATTTGATTTTTAATCAGACGACAATCAGTGACGATGAGGTTCAAG
AAGCTGCTAAGGCAGTCGGTGTACATCATTTTATAATGACACTACCTAAAGGGTATGATACTGTCCTTGATGACGCTGTG
ACATTGTCAGTTGGACAAAAGCAATTATTAACCATTGCTCGAGCTCTTTTGAAAAATTCTCCCTTACTTATCTTAGATGA
AGCAACTTCATCTGTTGATACACGTACAGAAGAGTTAATTCAAAAAGCTATGGACAAACTTATGGAAGGAAGAACATCAT
TTGTTATCGCACATCGTTTATCAACGATTAAAAACGCAGATTTGATTTTGGTCATGAAAGATGGGAATATCATTGAGCAA
GGCAGTCATGATGTTTTGATGTCTCAAAGTGGTTTTTATGCTGATCTGTATAATTCTCAATTCGAATCAGCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(364-510)

ABC transporter transmembrane region (ABC_membrane)

(26-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

76.125

98.973

0.753