Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   KW2_RS00760 Genome accession   NC_022369
Coordinates   150837..151625 (+) Length   262 a.a.
NCBI ID   WP_021036579.1    Uniprot ID   -
Organism   Lactococcus cremoris subsp. cremoris KW2     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 145837..156625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KW2_RS00735 (kw2_0149) - 146148..146927 (+) 780 Protein_136 DNA/RNA non-specific endonuclease -
  KW2_RS00740 (kw2_0150) - 147102..147311 (+) 210 WP_021036577.1 hypothetical protein -
  KW2_RS00745 (kw2_0151) - 147323..147562 (+) 240 WP_011675217.1 hypothetical protein -
  KW2_RS00750 (kw2_0152) - 147760..149340 (+) 1581 WP_021036578.1 hypothetical protein -
  KW2_RS00755 (kw2_0153) - 149470..150684 (+) 1215 WP_011675219.1 pyridoxal phosphate-dependent aminotransferase -
  KW2_RS00760 (kw2_0154) codY 150837..151625 (+) 789 WP_021036579.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  KW2_RS00765 (kw2_0155) gatC 151903..152208 (+) 306 WP_011675221.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  KW2_RS00770 (kw2_0156) gatA 152208..153668 (+) 1461 WP_021036580.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  KW2_RS00775 (kw2_0157) - 153671..154273 (+) 603 WP_021036581.1 NUDIX hydrolase -
  KW2_RS00780 (kw2_0158) gatB 154312..155745 (+) 1434 WP_021036582.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29213.56 Da        Isoelectric Point: 4.5306

>NTDB_id=62259 KW2_RS00760 WP_021036579.1 150837..151625(+) (codY) [Lactococcus cremoris subsp. cremoris KW2]
MATLLEKTRKITAILQDGVTDLQQELPYNSMTERLANVIDCNACVINTKGELLGYSLPYNTNNDRVDQFFYDRKLPDEYV
RAAVRIYDTMANVPVDRPLAIFPEESLENFPKGLTTLAPIYGSGMRLGTFIMWREDGEFTDDDLVLVELATTVIGVQLSN
LKLEQMEENIRKDTMATMAVNTLSYSEMKAVKAIIEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSLG
MKGTYLKVLNTGLFDKLAGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=62259 KW2_RS00760 WP_021036579.1 150837..151625(+) (codY) [Lactococcus cremoris subsp. cremoris KW2]
GTGGCTACATTACTTGAAAAAACACGTAAAATCACCGCGATTTTGCAAGATGGAGTGACCGATTTGCAACAAGAGTTGCC
ATACAACAGTATGACTGAACGCTTGGCAAACGTCATTGATTGCAACGCCTGCGTGATTAATACGAAGGGCGAGTTGCTTG
GTTACTCATTGCCTTACAATACAAACAATGATCGCGTTGACCAATTTTTCTACGATCGTAAATTGCCTGACGAATACGTT
CGTGCAGCAGTACGTATTTACGATACAATGGCAAACGTTCCTGTTGATCGTCCTTTAGCAATTTTCCCAGAAGAAAGTCT
TGAGAACTTTCCAAAAGGTTTGACAACTTTAGCGCCTATCTATGGTTCTGGAATGCGTCTTGGAACATTTATTATGTGGC
GTGAAGATGGTGAATTTACAGATGACGATCTTGTTTTGGTTGAGCTTGCAACAACAGTAATCGGTGTACAACTCTCAAAC
CTTAAACTTGAACAAATGGAAGAAAATATCCGTAAAGACACTATGGCAACAATGGCTGTTAATACACTTTCTTACTCAGA
AATGAAAGCTGTCAAAGCAATTATTGAAGAACTTGATGGTGAAGAAGGGCATGTTATTGCCTCTGTCATTGCTGACAAGA
TTGGTATTACACGTTCAGTGATTGTTAATGCTTTACGTAAACTTGAATCTGCTGGTGTTATTGAATCACGTTCACTTGGT
ATGAAAGGAACTTATCTTAAAGTTCTTAATACTGGTTTGTTTGATAAACTTGCTGGACGTAATTTCTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

98.855

100

0.989
  codY Bacillus subtilis subsp. subtilis str. 168

47.843

97.328

0.466

Multiple sequence alignment