Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   LL046_RS10855 Genome accession   NZ_CP086088
Coordinates   2129584..2130522 (-) Length   312 a.a.
NCBI ID   WP_017865095.1    Uniprot ID   A0AAE4NRQ1
Organism   Lactococcus lactis subsp. lactis strain EIP13A     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2124584..2135522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL046_RS10830 (LL046_10795) frr 2124703..2125260 (-) 558 WP_004254618.1 ribosome recycling factor -
  LL046_RS10835 (LL046_10800) pyrH 2125472..2126188 (-) 717 WP_004254608.1 UMP kinase -
  LL046_RS10840 (LL046_10805) - 2126273..2126725 (-) 453 WP_010906263.1 hypothetical protein -
  LL046_RS10845 (LL046_10810) - 2126859..2128046 (-) 1188 WP_015427114.1 acetate kinase -
  LL046_RS10850 (LL046_10815) - 2128202..2129389 (-) 1188 WP_012898519.1 acetate kinase -
  LL046_RS10855 (LL046_10820) comYH 2129584..2130522 (-) 939 WP_017865095.1 class I SAM-dependent methyltransferase Machinery gene
  LL046_RS10860 (LL046_10825) - 2130610..2130861 (-) 252 WP_004254583.1 DUF3165 family protein -
  LL046_RS10865 (LL046_10830) typA 2130962..2132794 (-) 1833 WP_025016832.1 translational GTPase TypA -
  LL046_RS10870 (LL046_10835) - 2132982..2133440 (-) 459 WP_017865096.1 hypothetical protein -
  LL046_RS10875 (LL046_10840) - 2133597..2134223 (-) 627 WP_017865097.1 ABC transporter ATP-binding protein -
  LL046_RS10880 (LL046_10845) - 2134224..2135159 (-) 936 WP_226898141.1 DUF1430 domain-containing protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34750.90 Da        Isoelectric Point: 4.3717

>NTDB_id=622444 LL046_RS10855 WP_017865095.1 2129584..2130522(-) (comYH) [Lactococcus lactis subsp. lactis strain EIP13A]
MDMEKVAQGFELVVANIMLLSEKLDTDFYDAFVEQNAALLDDTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQPNHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
QAEFMQIDAVQKRLMEPGDVVVSDLPIGFYPDDEVAKNFEVATTDGHTFAHHLLIEQSFNYLKEGSFAIFLAPEDLLTSP
QGPLLKEWISKHGSVMAVITLPKSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEVFMEEFTKIVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=622444 LL046_RS10855 WP_017865095.1 2129584..2130522(-) (comYH) [Lactococcus lactis subsp. lactis strain EIP13A]
ATGGATATGGAAAAAGTGGCTCAAGGTTTTGAGCTAGTTGTTGCAAATATTATGTTATTATCTGAGAAATTGGATACAGA
TTTTTATGATGCTTTTGTAGAACAAAATGCTGCTCTTTTAGATGATACTGACCAAGGAATTGTTGAATTGTCAGTAAATA
ATGACAAACTTCGTCAGTTAAATTTATCAAATAAGGAGTGGCAAAAACTTTTTCAATTTGTTTTGTTGAAAGGGTCACAA
GTCGCACCACTTCAGCCCAATCATGCAATGACTCCAGATGCAATTGGTTTAATTTTTAATTTCATTATTGAACATCTTAA
TAAAAATTCTGAACTTCGTTTAATTGAATTTGGATCTGGTATGGGTAATCTTGCTGAAACTCTTTTAGTTAATCTTAATA
AAAAGGTTGATTATGTAGGCTTTGAAGTTGATGATTTACTTTTAGATTTGTCTGCTTCAATGGCTGAAATTATGGGGAGT
CAGGCTGAGTTCATGCAAATTGATGCAGTACAAAAGCGTTTGATGGAACCTGGAGACGTTGTTGTCAGTGATTTACCAAT
TGGTTTTTATCCAGATGATGAAGTTGCAAAGAATTTTGAAGTTGCGACTACTGACGGACATACTTTTGCTCATCATCTTT
TGATTGAGCAATCATTTAATTATTTAAAAGAGGGTTCTTTTGCCATTTTCCTAGCTCCAGAAGATTTACTGACAAGTCCT
CAAGGACCACTATTAAAGGAGTGGATTAGTAAACATGGAAGTGTGATGGCTGTCATCACTTTACCAAAATCACTTTTTAA
TGCTGATGCTAAGGCGATTTATGTTTTGAAAAAGGGGCCGGCTGCACATGCAACTTTTGCTCACCCTTTGTCTTCACTGA
CAGACAGAGAAAGTTTAGAAGTCTTTATGGAAGAATTTACAAAAATTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

48.882

100

0.49
  comYH Streptococcus mutans UA159

48.562

100

0.487