Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LK685_RS13075 Genome accession   NZ_CP086061
Coordinates   2512194..2512973 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus sp. BC1-43     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2507194..2517973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK685_RS13045 (LK685_13050) fliH 2507212..2507964 (-) 753 WP_003244804.1 flagellar assembly protein FliH -
  LK685_RS13050 (LK685_13055) fliG 2507957..2508973 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  LK685_RS13055 (LK685_13060) fliF 2508986..2510596 (-) 1611 WP_010886506.1 flagellar basal-body MS-ring/collar protein FliF -
  LK685_RS13060 (LK685_13065) fliE 2510642..2510962 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  LK685_RS13065 (LK685_13070) flgC 2510973..2511425 (-) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  LK685_RS13070 (LK685_13075) flgB 2511425..2511814 (-) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  LK685_RS13075 (LK685_13080) codY 2512194..2512973 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LK685_RS13080 (LK685_13085) hslU 2513013..2514416 (-) 1404 WP_014476801.1 HslU--HslV peptidase ATPase subunit -
  LK685_RS13085 (LK685_13090) clpQ 2514433..2514978 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  LK685_RS13090 (LK685_13095) xerC 2514991..2515905 (-) 915 WP_003231988.1 tyrosine recombinase XerC -
  LK685_RS13095 (LK685_13100) trmFO 2515973..2517280 (-) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=622187 LK685_RS13075 WP_003220850.1 2512194..2512973(-) (codY) [Bacillus sp. BC1-43]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=622187 LK685_RS13075 WP_003220850.1 2512194..2512973(-) (codY) [Bacillus sp. BC1-43]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTTCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467