Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   LK447_RS03010 Genome accession   NZ_CP085947
Coordinates   615137..615418 (+) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain FDAARGOS_1563     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 610137..620418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK447_RS02990 (LK447_02990) groES 610703..611059 (-) 357 WP_000671949.1 co-chaperone GroES -
  LK447_RS02995 (LK447_02995) dnaG 611345..613024 (+) 1680 WP_000601603.1 DNA primase -
  LK447_RS03000 (LK447_03000) - 613021..614073 (+) 1053 WP_000721178.1 MnmA/TRMU family protein -
  LK447_RS03005 (LK447_03005) - 614163..614990 (+) 828 WP_001154912.1 DUF5718 family protein -
  LK447_RS03010 (LK447_03010) comB2 615137..615418 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  LK447_RS03015 (LK447_03015) comB3 615418..615681 (+) 264 WP_000584956.1 hypothetical protein Machinery gene
  LK447_RS03020 (LK447_03020) comB4 615683..618046 (+) 2364 WP_000890552.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  LK447_RS03030 (LK447_03030) - 618348..619688 (+) 1341 WP_001864262.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=621482 LK447_RS03010 WP_001272686.1 615137..615418(+) (comB2) [Helicobacter pylori strain FDAARGOS_1563]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=621482 LK447_RS03010 WP_001272686.1 615137..615418(+) (comB2) [Helicobacter pylori strain FDAARGOS_1563]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989