Detailed information    

insolico Bioinformatically predicted

Overview


Name   scnK   Type   Regulator
Locus tag   LK450_RS02390 Genome accession   NZ_CP085939
Coordinates   484473..485783 (-) Length   436 a.a.
NCBI ID   WP_003024595.1    Uniprot ID   -
Organism   Streptococcus anginosus subsp. anginosus strain FDAARGOS_1569     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context


Location: 479473..490783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK450_RS02370 (LK450_02370) - 479681..480925 (-) 1245 WP_003031357.1 NAD(P)H-dependent oxidoreductase -
  LK450_RS02375 (LK450_02375) - 480944..481552 (-) 609 WP_003031350.1 NADPH-dependent FMN reductase -
  LK450_RS02380 (LK450_02380) - 481572..482501 (-) 930 WP_026248161.1 FAD:protein FMN transferase -
  LK450_RS02385 (LK450_02385) nox 482803..484176 (+) 1374 WP_003031379.1 H2O-forming NADH oxidase -
  LK450_RS02390 (LK450_02390) scnK 484473..485783 (-) 1311 WP_003024595.1 sensor histidine kinase KdpD Regulator
  LK450_RS02395 (LK450_02395) scnR 485784..486473 (-) 690 WP_003024592.1 response regulator transcription factor Regulator
  LK450_RS02400 (LK450_02400) - 486645..487553 (+) 909 WP_003031366.1 ABC transporter ATP-binding protein -
  LK450_RS02405 (LK450_02405) - 487553..488293 (+) 741 WP_003024586.1 ABC transporter permease -
  LK450_RS02410 (LK450_02410) - 488290..489018 (+) 729 WP_003024584.1 ABC transporter permease -

Sequence


Protein


Download         Length: 436 a.a.        Molecular weight: 49993.84 Da        Isoelectric Point: 8.7729

>NTDB_id=621385 LK450_RS02390 WP_003024595.1 484473..485783(-) (scnK) [Streptococcus anginosus subsp. anginosus strain FDAARGOS_1569]
MDTVKFFTKLLTRYVLLLLALIIGLVFVYGLVFSSYFSFYGKEKPELLYTKIAQSSQQNNFNFDKSSKIEMDKQNTWAMV
LNQDGNIVQSYHLPKGLKRHYTNTDMVKFSRWYLEDYPVFSYVRGQQILVLGYPKKHSLAKFNFYANTQFIRNFLSLGLV
FLGIILLLIFILLSRSKLRIKKEMEPIITAVTSLSQGQNIALNEKGNFSEIKTALNETSHILEESNTMKEQWIRGVSHDL
RNPLMLISGYNSQLEQQYGKGKQTEEIENQIQTMKEMISNLNMSYLLDNQKHHSEFSSLDLVAVLRTVIADILNNYETIT
LHFDLPTEAVLVKGEVTLLERAFRNLLLNSIIHSGSNQIDLTYQLSDNKVLIIIADQGDITAQKITELNQKSTNYESHGM
GTVITKQIIKLHQGEIVFLDNQPGLKVIISLPLVKD

Nucleotide


Download         Length: 1311 bp        

>NTDB_id=621385 LK450_RS02390 WP_003024595.1 484473..485783(-) (scnK) [Streptococcus anginosus subsp. anginosus strain FDAARGOS_1569]
ATGGATACCGTTAAATTTTTTACTAAGTTATTAACCAGGTATGTTCTATTACTCTTGGCTTTAATCATAGGACTTGTTTT
TGTTTATGGTTTGGTTTTCTCATCCTATTTTAGTTTCTATGGAAAGGAAAAACCGGAACTACTTTACACTAAAATCGCTC
AATCGAGTCAACAGAATAATTTTAATTTTGATAAAAGCAGCAAAATTGAAATGGATAAACAAAATACTTGGGCTATGGTA
CTGAATCAAGATGGCAATATTGTCCAATCTTATCATTTACCTAAAGGACTCAAAAGGCATTATACGAATACTGATATGGT
TAAATTTTCACGCTGGTATTTAGAAGATTACCCTGTTTTCTCCTATGTACGAGGTCAGCAAATTTTAGTTTTGGGCTATC
CTAAAAAGCATTCTTTAGCAAAATTTAATTTCTATGCTAATACGCAATTTATTAGGAATTTTCTCAGTTTGGGACTTGTT
TTCTTGGGTATTATTCTTTTACTTATTTTTATTCTTTTGAGCCGATCAAAGTTGCGCATTAAAAAGGAGATGGAGCCGAT
TATTACTGCTGTCACTTCTTTGTCTCAAGGTCAAAATATCGCTCTTAATGAAAAGGGAAATTTCTCTGAAATTAAGACAG
CTCTCAATGAAACCTCTCATATTTTGGAAGAAAGCAACACGATGAAAGAGCAATGGATTAGAGGGGTCAGTCATGATTTA
CGCAATCCTCTTATGCTCATATCAGGTTATAACAGTCAGCTAGAGCAGCAATATGGTAAAGGAAAGCAGACGGAGGAAAT
TGAAAATCAGATTCAAACTATGAAAGAAATGATTTCTAATCTCAATATGAGCTACTTATTGGATAATCAAAAGCATCACT
CCGAATTTTCGAGTCTTGATTTGGTTGCAGTCCTACGAACAGTAATTGCCGATATATTGAATAATTATGAAACAATTACA
CTTCATTTTGATTTGCCTACCGAGGCAGTGTTGGTAAAAGGAGAGGTAACTTTACTAGAAAGAGCTTTTAGAAATCTCTT
GCTTAATAGTATCATACACAGCGGTTCTAACCAGATTGATCTGACTTATCAATTATCTGATAATAAAGTGCTCATCATCA
TTGCGGATCAAGGAGATATTACAGCTCAAAAAATTACTGAGCTAAATCAAAAATCGACTAATTATGAATCACATGGTATG
GGAACGGTTATCACTAAACAAATTATTAAATTACATCAAGGTGAAATTGTTTTTTTAGACAATCAGCCAGGCTTAAAAGT
CATCATTTCTTTACCTTTAGTAAAGGACTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnK Streptococcus mutans UA159

83.028

100

0.83