Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   LK454_RS06475 Genome accession   NZ_CP085923
Coordinates   1329117..1329398 (+) Length   93 a.a.
NCBI ID   WP_001272690.1    Uniprot ID   -
Organism   Helicobacter pylori strain FDAARGOS_1601     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1324117..1334398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK454_RS06455 (LK454_06455) groES 1324684..1325040 (-) 357 WP_000671934.1 co-chaperone GroES -
  LK454_RS06460 (LK454_06460) dnaG 1325326..1327005 (+) 1680 WP_000601629.1 DNA primase -
  LK454_RS06465 (LK454_06465) - 1327002..1328054 (+) 1053 WP_000721206.1 MnmA/TRMU family protein -
  LK454_RS06470 (LK454_06470) - 1328144..1328971 (+) 828 WP_001154924.1 DUF5718 family protein -
  LK454_RS06475 (LK454_06475) comB2 1329117..1329398 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  LK454_RS06480 (LK454_06480) comB3 1329398..1329661 (+) 264 WP_000584956.1 hypothetical protein Machinery gene
  LK454_RS06485 (LK454_06485) comB4 1329663..1332026 (+) 2364 WP_000890513.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  LK454_RS06495 (LK454_06495) - 1332333..1333673 (+) 1341 WP_001864262.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10525.78 Da        Isoelectric Point: 9.1450

>NTDB_id=621291 LK454_RS06475 WP_001272690.1 1329117..1329398(+) (comB2) [Helicobacter pylori strain FDAARGOS_1601]
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=621291 LK454_RS06475 WP_001272690.1 1329117..1329398(+) (comB2) [Helicobacter pylori strain FDAARGOS_1601]
ATGTCCGCTCATTTTTTAAAAATCGTTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCTCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAGGCCCCGAGTTTGGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

100

100

1